BAC Information

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BAC

Clone NameMSMg01-427F12
Chromosome14 (Build37)
Map Location 94,921,742 - 94,922,232
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427F12.T7 (MSMg01no427_f12.b1)MSMg01-427F12.TJ (MSMg01no427_f12.g1)
ACCAG520567AG520568
length758760
length of high quality
(start - end)
554 (51 - 604)491 (81 - 571)
definitionCHROMAT_FILE: MSMg01no427_f12.b1 PHD_FILE: MSMg01no427_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:12 2005CHROMAT_FILE: MSMg01no427_f12.g1 PHD_FILE: MSMg01no427_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTACATCTGTACCCCATTTTTAATAGGGTTATTTG
ATTTTTCTGGAGACCAGTTCTCTGTATATATTGGATATTACTTCCTTATC
TGATTTAGGATTGGTAAATATCCTTTCCTAATCTGTTAGTGGCCTTTTAA
TCTTATTGACAGTGTCTTTTGCCTTATAGAAGCTTTGCAATTTTGAGGTG
CTATTTGTTGATTCTCAATCTTATAGCACAAACAATTGCTGTTCTGTTCA
GAAAAATTTCCCCTGTACCTGTATCTTTGAGGCTTTCCCCCTCTTTCTCC
TCTATAAGTTTCAGAGACTCTGGTTTTATTTGGAGTTCCTTGATCTACTT
AGACTTGAACTTTGTACAAGGAGATCAGAATGGATCAATTCGCATTCTTC
TACAGGATAACCAACAATAGAACAAGCACCGTTTGTGGAAAATGCTGTCT
TCTCTCAACCTGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGCATCTTCAATTCTATTCCATTGATCTACCT
GTCTGTCAATGTACCAGTACCATGCAGGNTTTTTTGTTTTGTTTTGTTTT
GNATTGGNTTTCACAATTGCTCTGTAGTACAGCTTGGAGTCAGGCATGTT
GATTCCACCCAAGGTCTTTTATTGAAAGAATAATTTTACTAACCAAGGTT
GTTTGGTA
NNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAAAAGCCATGCATAGA
ATACTGCTTTGAAATTAAGATCACAGAACACATCTCTAACTTGAAGGACA
GAAAAAAATAAGTGTTATGACTCTCTCTCACTTTACATACCATGATGATT
CTTCAATTAGTGAGCCCTAGGTCTCTGACCACAAATGTCACTGTTACAAG
TATGTAGCTTCTGTAATTTAGGGAGTTGATTTATCAGAAAGTAGAAAAAT
AAAACTTCAGTAATGGCTCAGAGACATGACTATGAAATTGAATCCTTTAC
ATATAAATTGCCCCTTTATACATCCATAAATACCTAAAAGCAAAAAGTAA
TAGTTACTGATAGGCATCCTGTACTACACTCTTCTACATTCCAATTACAG
TATAATAGAATACTCCTTGATATATTTAATATAATTTTTCCAAAATTTCC
CTTTAATTTATTTGGGTACTCAAGATAAACCCTAAATTACCACATGAATT
TCTGGTCATTTTCATTTGTTTCAAAATGTTATNAAACAAAAGTCAAGACC
GTGCTTNCTAAATATTGTTATNCAGACAATTTTGATTCAAGNTGAAGAAA
CTGACTATGCAGAATGTACTGATAATAAACAGACAAACAAAAGCTTGTGT
CCCCAACACCTACCTAATTACCCGGGGTGGACCTTTCTTTGCGGAAAGAT
GGGGCCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_f12.g1 MSMg01no427_f12.g1 CHROMAT_FILE:
MSMg01no427_f12.g1 PHD_FILE: MSMg01no427_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:12 2005
         (491 letters)



>mm_chr14_94921542_94922432
          Length = 891

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcataaaagccatgcatagaatactgctttgaaattaagatcacagaacacatctctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataaaagccatgcatagaatactgctttgaaattaagatcacagaacacatctctaac 260

                                                                       
Query: 61  ttgaaggacagaaaaaaataagtgttatgactctctctcactttacataccatgatgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaggacagaaaaaaataagtgttatgactctctctcactttacataccatgatgatt 320

                                                                       
Query: 121 cttcaattagtgagccctaggtctctgaccacaaatgtcactgttacaagtatgtagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcaattagtgagccctaggtctctgaccacaaatgtcactgttacaagtatgtagctt 380

                                                                       
Query: 181 ctgtaatttagggagttgatttatcagaaagtagaaaaataaaacttcagtaatggctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtaatttagggagttgatttatcagaaagtagaaaaataaaacttcagtaatggctca 440

                                                                       
Query: 241 gagacatgactatgaaattgaatcctttacatataaattgcccctttatacatccataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagacatgactatgaaattgaatcctttacatataaattgcccctttatacatccataaa 500

                                                                       
Query: 301 tacctaaaagcaaaaagtaatagttactgataggcatcctgtactacactcttctacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacctaaaagcaaaaagtaatagttactgataggcatcctgtactacactcttctacatt 560

                                                                       
Query: 361 ccaattacagtataatagaatactccttgatatatttaatataatttttccaaaatttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaattacagtataatagaatactccttgatatatttaatataatttttccaaaatttcc 620

                                                                       
Query: 421 ctttaatttatttgggtactcaagataaaccctaaattaccacatgaatttctggtcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttaatttatttgggtactcaagataaaccctaaattaccacatgaatttctggtcatt 680

                      
Query: 481 ttcatttgttt 491
           |||||||||||
Sbjct: 681 ttcatttgttt 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)