BAC Information

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BAC

Clone NameMSMg01-428D02
Chromosome14 (Build37)
Map Location 27,984,758 - 27,985,041
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D02.T7 (MSMg01no428_d02.b1)MSMg01-428D02.TJ (MSMg01no428_d02.g1)
ACCAG521215AG521216
length725823
length of high quality
(start - end)
284 (85 - 368)34 (83 - 116)
definitionCHROMAT_FILE: MSMg01no428_d02.b1 PHD_FILE: MSMg01no428_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:18 2005CHROMAT_FILE: MSMg01no428_d02.g1 PHD_FILE: MSMg01no428_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTACTAGAGGCG
CNGGAATCTTTCAATGGCGATAAAAGGCATGAGNGTTCCGGCTAAGTGGA
AATTGAAAAACATACGCTATCTTTGCGGGAAGCAAATCCAGATGTAGGGA
CAGGAATCTCCCTCTGAAATGTTCCTCGACAACTGAGAACAAGGATAGCA
ACTGCCTGGACAGGCATTTCCGTTCCTAGTATTTCCCATCCTGTTCAGGC
CTCCTGTTGGGAATGCCAGCCACTGTGGCCAAAGCTGCAGGTTTCCCAAG
AGAATCCAGAATTCAAGATTTGTTTTTCTTATTCTCAGACTAGGTGTCCT
GGCTTTGAAAGATTGGCTACTCACTGAAAAAGTTTCCTTTAAGCATTTTT
GAGCTAAAATTGAAAAAGCGGCTAGCTTACAAGACAGGGGAGACGCCGTG
CCTACACCCTGGAGCTTTGCGGGTATGGAGAGTGAGACTCAGAGAGAATG
GCCTGTCTCAGGTTCCAGAGCTGGATTTCATGGTGGATGACTGGGTCCCC
AGTGCAGGCCTTTCTCTTCTGTCTCTACCCAGGATGCTTCTGTTGGGCTT
TACATAGAGCTTCTAGAGGCATTTCAATGCAAGTGTTGCGGCCACCCAGC
CCAATGTGTATTTTGATGCATCTGCAGATGGAAGGATCCCCAGAGACTTT
AATCATGGCCTCCATCTTTGCCTGG
NGCTCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGCTGCGGAATTCTAAAATCCTGTTGGGTTTATATGA
CAGGGAAAGGGAAGGGAGGTCCCCAAGGAAGAAGTGTGTGATAGAGATAT
ATATATATATTTTTTTGTTTTTGCGGTGTCTTATGTTTTTTTTCCCCCTC
CCCCCCCCCTCCTCCCTCTCCCCCCTTCCCTCCTCCTCTTCCTCCCCCCT
TTTTTTTTCCCCCCCCCCCCCTCTCCCCTTCTTCTCTTCTCCCCCCTCGC
CCCCCGCCCCCCGCCCCTTCTCTACCTCTTCCCCCCACCCACCGCGCCCC
CCCCTCCCAGTCTTTTCTCTCCCTCCCCCCCTCGCCCTCTCCCCTCTCTT
CCTCCCCCCCTTCCTTCCCTCCCCTCCCCCCCCCCTCTCTCTTCTTCCCT
TCCCTTTTTCCCCCCCCCCCCTTCTTTCCCCCCTCTCCCCCTCCTCCTTC
TCCGCCTTCCCCCTCCTCCCTTCCTTCCCTTTCCCTTCTTCTCTGCTTTC
TCCCTCTTCCCTCCCTTCCCCTCCCCTCTCCTTCCCCGCCCCCTCCCCCC
TTCCCCCTCCCTCCTCCCCCCCCCTCCCTCTTTTGTTCCCCCCTCCTCCT
CCTCCCTATCCTCCCTTTCTCTCCCCTTCTCCCCTTCTTCCCCCCCTTTC
CCTCCCTCCCCCCCCCCCCTTCCTTTCTCTTTCTTTCCCCCCCCTCCTCC
TCTTTCCCTCTTCTCTCCCCCTCCCTCCTTCCTTCTCCCCCCCCTTTCCC
TCTTTCCTCTCTCCCCCCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d02.b1 MSMg01no428_d02.b1 CHROMAT_FILE:
MSMg01no428_d02.b1 PHD_FILE: MSMg01no428_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:18 2005
         (284 letters)



>mm_chr14_27984558_27985241
          Length = 684

 Score =  456 bits (236), Expect = e-133
 Identities = 272/284 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttccggctaagtggaaattgaaaaacatacgctatctttgcgggaagcaaatccagatg 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 201 gttccggctaagtggaaattgaaaaacatacgctatctttgggggaagcaaatccagacg 260

                                                                       
Query: 61  tagggacaggaatctccctctgaaatgttcctcgacaactgagaacaaggatagcaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggacaggaatctccctctgaaatgttcctcgacaactgagaacaaggatagcaactg 320

                                                                       
Query: 121 cctggacaggcatttccgttcctagtatttcccatcctgttcaggcctcctgttgggaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 cctggacaggcatttccgttcctagtatttcccatcctgttcaggcctcctgctgggaat 380

                                                                       
Query: 181 gccagccactgtggccaaagctgcaggtttcccaagagaatccagaattcaagatttgtt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagccactgtggccaaagctgcaggtttcccaagagaatccagaattcaagatttgtt 440

                                                       
Query: 241 tttcttattctcagactaggtgtcctggctttgaaagattggct 284
             ||  |||||||| | || || |||||||||||||||||||||
Sbjct: 441 cctcagattctcaggccagttgccctggctttgaaagattggct 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)