BAC Information

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BAC

Clone NameMSMg01-428N15
Chromosome14 (Build37)
Map Location 23,398,377 - 23,398,615
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075, EG435392
Downstream geneLOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428N15.T7 (MSMg01no428_n15.b1)MSMg01-428N15.TJ (MSMg01no428_n15.g1)
ACCAG521720AG521721
length759760
length of high quality
(start - end)
364 (74 - 437)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no428_n15.b1 PHD_FILE: MSMg01no428_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:09 2005CHROMAT_FILE: MSMg01no428_n15.g1 PHD_FILE: MSMg01no428_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGAGGATCCGC
GGAATTCTGGACTGCCTGCAGCGTGGAAGGCCTCAGATGCCAGGATGAAG
TCTCTACAGTGAAGGTGCTCTGGGGAAAATGGGAAATAGCCAGACATAGT
AGTGCATGCCTGCAATTCTGGTGCTTAGAAATCTGAAGCAGGAGAATAAC
CTTGAGTCTCACACTAGCCTGGGCTAGATCCTGTCTCAGCAATTAAAAGG
GTCTGAGGGAGTGGGTGGTGATGCTGATGCTGAAGTACAAAAATGAACAA
GGAAGTGGCCTCCTGTTCATTTTTCTACATAGCTCTAGCAAATTACCGAG
GGCTTAGTGGCTTTAAAGAACAAAAAAATATGATCTCATAGCTGTAGGCC
AAAAGTACAAGGGGCTCAGCTGGCTGCTCTGCCTCAGGACTCGGCAAGGC
TATAATCAAGGCGTTGCTTGTGTAACGGCCCCACTTGGAGACTCTTGGGA
AAGGTCTGCTCTAGTTCCTCCCGTTTGCTTGTACAATCGGTTCCACTGAG
CTTCCGTACTGCAATCTGCGCCTTTACCCTCCCATGAGACTCTCACTTCA
TCTTTTTTAACTTCCCAGCTCTTAAATCACGTCTTCTCCCACTTTTTGCT
TGCGTTTCCCTTATATACCCCTCCCTTTTTCCACTCTTTTTTCATATATT
TTGTCGCCCTTATTTTCTTTCTACTCTCTCCTTTATTTATCTTTTTTTTT
TCTCCCCTT
CATGCTATCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACCACCAGCGAGTGTCTGTTGCTCACAG
TCTGGAGGCGGGCAGTCTGAGGGCAGGGTCCAGCAGCAGATGGATTTTCG
TGATGTGTCCCTTGCCTGTCCTTGCATTGGGGACAGAGCAGGAGGAGGGA
AGGGGAAGAAGAGGAAATGTTCTTGTCTGCTCTTATCAGTAAATTAATTC
ATCCTTTCAAGAGCTCTACCTTTAGGACTTAATAACTTCTCAGGAGATTT
GGAGTTGAAAGATTTTTTTGGTGGGAGTGAGTTGTAAACAGTGCTTTACA
AATGCGCCCCTTATGGCCCTCATCCATGGGTGCTTTATCAGAAGTAGAGG
AAGACAGCTTACAAGTAAGTCTAATGTCATCATGTCATTCACGGCCCGTG
CCATAATGACATTTAGTGGAGGTTTCCTTCATTAACCCTTTGGTCTTCTC
GGCTCCGAGCTACCGCTCTGTCGCATTTTCTATCGTCCTTGGCTGTCTCA
CATGATCATCCGCGCCCTATGTTTTTTTGGATCTTACCGCACATGATTGC
TTCCCTGACCCCCTCATCGTTTCTACCACATTCATCCTTCGAGTCTCTTT
TTTTGTCTTGTGCCTCATCTCCTTGCCTTAATATTTTGATCCCACTAACC
CCGCTTTCTTTTGTCCTTTTTTATTCTACGACCCCCGTTCCCTTTTTTTT
TTTCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_n15.g1 MSMg01no428_n15.g1 CHROMAT_FILE:
MSMg01no428_n15.g1 PHD_FILE: MSMg01no428_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:09 2005
         (239 letters)



>mm_chr14_23398177_23398815
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaccagcgagtgtctgttgctcacagtctggaggcgggcagtctgagggcagggtcca 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 accaccagcgagtgtctgttgctcacagtctggaggtgggcagtctgagggcagggtcca 260

                                                                       
Query: 61  gcagcagatggattttcgtgatgtgtcccttgcctgtccttgcattggggacagagcagg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggagatggattttcgtgatgtgtcccttgcctgtccttgcattggggacagagcagg 320

                                                                       
Query: 121 aggagggaaggggaagaagaggaaatgttcttgtctgctcttatcagtaaattaattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagggaaggggaagaagaggaaatgttcttgtctgctcttatcagtaaattaattcat 380

                                                                      
Query: 181 cctttcaagagctctacctttaggacttaataacttctcaggagatttggagttgaaag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttcaagagctctacctttaggacttaataacttctcaggagatttggagttgaaag 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)