BAC Information

Click to search

BAC

Clone NameMSMg01-429K21
Chromosome14 (Build37)
Map Location 104,727,722 - 104,910,000
singlet/doubletdoublet
Overlap genePou4f1, 2610206B13Rik
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429K21.T7 (MSMg01no429_k21.b1)MSMg01-429K21.TJ (MSMg01no429_k21.g1)
ACCAG522351AG522352
length746743
length of high quality
(start - end)		466 (59 - 524)471 (67 - 537)
definitionCHROMAT_FILE: MSMg01no429_k21.b1 PHD_FILE: MSMg01no429_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:14 2005CHROMAT_FILE: MSMg01no429_k21.g1 PHD_FILE: MSMg01no429_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,909,539 - 104,910,000)(104,727,722 - 104,728,192)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGC
ATCATACTGGATCAATGATGATTCTGCCATCCTAAATCCTAGTAGAAATA
GCCTGAAAAAAATTGTCCCAGACTCGGTGAATAGAAAGCATTTTGGTTTG
TGATTATGAATGTTAAATATATACTAAGCACATCAGGTCAAAGATGCATT
CTCCCTGACCAGCTGTGTCTGCTAGTATCTTTGACATATGAGAAATAGTG
TAGTCCAGAGAAGCATCATTTTCAATCCTAAGCGTTCTCTTTTCACCCCA
CACACAGCTATGCTTGAGAGGAGCAGTTTATGCTAAACACAATCATATTG
GGAATCTCGTTATTGGGGTTGTCATGTACTAAAAGTGGTTTCTTCTTTTC
AAAGGTACGTCAGCCTGTCGTATGCACCAACAACCATGTGTTTTGTTCCA
TTTGCATCGACTTGTGGTTGAAGAATAATAGCCAGTGTCCAGCCTGCAGA
GTCCCGATCACTCCTGAAAATCCTTGCAAAGAGATTATTGGTATGGGACT
ATTTTATATGTGCACAAGAATAGATTTAAGATAGCTTATAAATATTTGGG
AGAAGAGTGATATAAAGATCTCATTTTTACAGATCCATATANTGGATTTT
ATAGCGAGTATATCCAGTGGACCTTAGAAAAGAGAACGGGGAGGAACCCC
AAAAAACCCTCCCGTCCCTTGTGGTTAAGTAAAACCCGCCCCAAAA

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCAGACTTGTGTCATTTCTTCAACAGAAATTCT
GTGAGACATCCAGAAATGATAAGGAGCCCTACTAGTTCCATAGACTAAGA
ACAAATGCCAAACTGTATGCCAATACCAGTGCCTGGTTACTACCCCAGCT
CTTCATTTCTACTGTGGCAGCTGTTCAGCTGCAACGTCACGTTTTGAATA
AATGTAAGCAGAAAGGATAACTTCAGAAAGTGTTAAGAGTGAAAAGAGGA
GGCGGTTCATTTTGATGACATGTCTTTAGTAAGTGTGATAAATGTTAATA
TTAAAGGAGGTCATTTCATTGGTATAAATTGTCTACACATATTCATTGTG
CCATGGGAAAAGATGACTTTACAACAGTGAATAACTGATAGCAGAAGCAA
AAACTCTGTTGTGGCTGAGGCACGACTACCCCGTTACTGTTAAATTTTCA
TTGACTAATTTAACTATTATCTCATTGTTCTTTTCCAAATAGAATAGTCA
GGCTAAAATTGCAAGCAAATAAGGCTACAAAATAGCATGATTATTTTTTT
TTATCATTTTAAGCTACAAATAGGTTACAGAACCCACAAAATTGTCCTAA
AAATAAAAAAAAAAAAAAAACCCAATTGCCCCTTCGTTTTCAACTAAATT
CTAAAAAATAACGTCCCATCTTAGTTCAAAAATTTCCCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_k21.b1 MSMg01no429_k21.b1 CHROMAT_FILE:
MSMg01no429_k21.b1 PHD_FILE: MSMg01no429_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
         (466 letters)



>mm_chr14_104909339_104910204
          Length = 866

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatcaatgatgattctgccatcctaaatcctagtagaaatagcctgaaaaaaattgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggatcaatgatgattctgccatcctaaatcctagtagaaatagcctgaaaaaaattgtcc 603

                                                                       
Query: 61  cagactcggtgaatagaaagcattttggtttgtgattatgaatgttaaatatatactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cagactcggtgaatagaaagcattttggtttgtgattatgaatgttaaatatatactaag 543

                                                                       
Query: 121 cacatcaggtcaaagatgcattctccctgaccagctgtgtctgctagtatctttgacata 180
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 542 cacatcaggtcaaagatgcattctccctgaccagctgtgtctgctcgcatctttgacata 483

                                                                       
Query: 181 tgagaaatagtgtagtccagagaagcatcattttcaatcctaagcgttctcttttcaccc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 482 tgagaaatagtgtagtccagagaagcatcattttgaatcctaagcgttctcttttcaccc 423

                                                                       
Query: 241 cacacacagctatgcttgagaggagcagtttatgctaaacacaatcatattgggaatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cacacacagctatgcttgagaggagcagtttatgctaaacacaatcatattgggaatctc 363

                                                                       
Query: 301 gttattggggttgtcatgtactaaaagtggtttcttcttttcaaaggtacgtcagcctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gttattggggttgtcatgtactaaaagtggtttcttcttttcaaaggtacgtcagcctgt 303

                                                                       
Query: 361 cgtatgcaccaacaaccatgtgttttgttccatttgcatcgacttgtggttgaagaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cgtatgcaccaacaaccatgtgttttgttccatttgcatcgacttgtggttgaagaataa 243

                                                     
Query: 421 tagccagtgtccagcctgcagagtcccgatcactcctgaaaa 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tagccagtgtccagcctgcagagtcccgatcactcctgaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_k21.g1 MSMg01no429_k21.g1 CHROMAT_FILE:
MSMg01no429_k21.g1 PHD_FILE: MSMg01no429_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
         (471 letters)



>mm_chr14_104727522_104728392
          Length = 871

 Score =  857 bits (443), Expect = 0.0
 Identities = 464/471 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagacttgtgtcatttcttcaacagaaattctgtgagacatccagaaatgataaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagacttgtgtcatttcttcaacagaaattctgtgagacatccagaaatgataaggag 260

                                                                       
Query: 61  ccctactagttccatagactaagaacaaatgccaaactgtatgccaataccagtgcctgg 120
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ccctagtagttccatagactaagaacaaatgccaaactatatgccaataccagtgcctgg 320

                                                                       
Query: 121 ttactaccccagctcttcatttctactgtggcagctgttcagctgcaacgtcacgttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactaccccagctcttcatttctactgtggcagctgttcagctgcaacgtcacgttttg 380

                                                                       
Query: 181 aataaatgtaagcagaaaggataacttcagaaagtgttaagagtgaaaagaggaggcggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaatgtaagcagaaaggataacttcagaaagtgttaagagtgaaaagaggaggcggt 440

                                                                       
Query: 241 tcattttgatgacatgtctttagtaagtgtgataaatgttaatattaaaggaggtcattt 300
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct: 441 taattttgatgacatgtctttagtaagtgtgataaatgttattattaaaggagattattt 500

                                                                       
Query: 301 cattggtataaattgtctacacatattcattgtgccatgggaaaagatgactttacaaca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 cattggtataaattgtctacacatattcattgtgccatgggaaaagatgactttacaata 560

                                                                       
Query: 361 gtgaataactgatagcagaagcaaaaactctgttgtggctgaggcacgactaccccgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaataactgatagcagaagcaaaaactctgttgtggctgaggcacgactaccccgtta 620

                                                              
Query: 421 ctgttaaattttcattgactaatttaactattatctcattgttcttttcca 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttaaattttcattgactaatttaactattatctcattgttcttttcca 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |