BAC Information

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BAC

Clone NameMSMg01-429P16
Chromosome14 (Build37)
Map Location 116,714,886 - 116,715,338
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429P16.T7 (MSMg01no429_p16.b1)MSMg01-429P16.TJ (MSMg01no429_p16.g1)
ACCAG522581AG522582
length748710
length of high quality
(start - end)
474 (60 - 533)453 (75 - 527)
definitionCHROMAT_FILE: MSMg01no429_p16.b1 PHD_FILE: MSMg01no429_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:37 2005CHROMAT_FILE: MSMg01no429_p16.g1 PHD_FILE: MSMg01no429_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCCTATTTTGAGAGGATCCGCGGAATTCCGAGGT
TTATAAGGTGGCAGTTTCTTTCTCTGCTGCTATGTCTTCTCTGCTTACTG
CCTTACCTTCCCCTCTATGGTGGAGTATATCACTCAGAAGTGCAAGCCAA
AGAAAACCTATTGTCTCTTAAATCCTTTGGTCAGATAATTTTATAGCACC
AACAAAGAAGATGTAGGGCCTCTCGCTGCTTTCTCTGACTCACTGGCACT
AAGCGTCATTGAGTAGACTATGGTGGCTGGCCAGTGGACACCAGCATTCA
CTTATCTGTATCTCCATGTCACTAGGACTACACGTGCCACTGGTTGTAAA
CATGTCTGACGGTTTTTCCTTGGGTTCTAAGGACTGACCCCAGGTCCTCA
TTTTTGTATGCAAGCACTTTACTGACTGAGTAGTTAGCCTAGGTATCCTG
ATTTATATCACACACACACACACACACACACACATACACACACACACACA
CTCACACACACACACACATACACACACACATACACACACACACACATATA
CACACACATAAACACACACACATACACACATACATACACACACACACATA
TACACACACATAAACACACACACACCTACACACACACACACATACTCACA
CACACTTATACTCACACGCGCGCGCACACACACTCACATAAACACATACC
CACTCTTACACACCCCCACTTTCGCCCACCCCTACCACCATTACCACG
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCACAGCCTCTTGGGCAAGCCATAA
GCTAATTGGACTTACGAACAGAGGATAGGGTGAAGTTATACTGACATGAA
CATGGGTACCCAAAAGTCAATTCACTGGGAAATCTCTACCCAGCATGGGT
GATGATTTCCTCAAGGCAGCATAGAAGGTGCATCTTTCTTTGTCTTTCCT
TGCCTACATACTCTATTTTCTACCCAACAGTCCAAGGCCATATGAAGTTA
ACACCATATTTACTTCATCTGGTTGGCAGGAAGGCATGACTTTCACTGCC
TCGTTTCTCTATAGTGAATATCCACAATCAACAATCCCAGTTAAAATGAT
CCTTGGAACATGCACAATTGAGCCCCTGACGATGGTGACTGTTTGCCTTA
GGGAACAATCCTGAATCTCATTACCACTCCTTCTGACGTCATCCTATTGG
CTCACTGCTCTTCACCAAATATTCCACGATTGCGCATACAATATATGTCC
ACTCAGATTTATTTCTCTAGATTCAACCTCTCAATTCCTCACCCCTGAAC
TTAATGCAGTGTATGACATCTATAACGATCTATAATGTCCAGAGTAGCAT
AGTATTATACCTTCTTTAATAGACTACTTTTCCCCCCGAAACTTTGTGAA
AAATGAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_p16.g1 MSMg01no429_p16.g1 CHROMAT_FILE:
MSMg01no429_p16.g1 PHD_FILE: MSMg01no429_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:37 2005
         (453 letters)



>mm_chr14_116714686_116715538
          Length = 853

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcacagcctcttgggcaagccataagctaattggacttacgaacagaggatagggtgaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacagcctcttgggcaaaccataagctaattggacttacgaacagaggatagggtgaa 260

                                                                       
Query: 61  gttatactgacatgaacatgggtacccaaaagtcaattcactgggaaatctctacccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatactgacatgaacatgggtacccaaaagtcaattcactgggaaatctctacccagc 320

                                                                       
Query: 121 atgggtgatgatttcctcaaggcagcatagaaggtgcatctttctttgtctttccttgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggtgatgatttcctcaaggcagcatagaaggtgcatctttctttgtctttccttgcc 380

                                                                       
Query: 181 tacatactctattttctacccaacagtccaaggccatatgaagttaacaccatatttact 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatactctagtttctacccaacagtccaaggccatatgaagttaacaccatatttact 440

                                                                       
Query: 241 tcatctggttggcaggaaggcatgactttcactgcctcgtttctctatagtgaatatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatctggttggcaggaaggcatgactttcactgcctcgtttctctatagtgaatatcca 500

                                                                       
Query: 301 caatcaacaatcccagttaaaatgatccttggaacatgcacaattgagcccctgacgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatcaacaatcccagttaaaatgatccttggaacatgcacaattgagcccctgacgatg 560

                                                                       
Query: 361 gtgactgtttgccttagggaacaatcctgaatctcattaccactccttctgacgtcatcc 420
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 561 gtgactgtttgccttagggaacaatcctgaatcacattaccactccttctgatgtcatcc 620

                                            
Query: 421 tattggctcactgctcttcaccaaatattccac 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 tattggctcactgctcttcaccaaatattccac 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)