BAC Information

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BAC

Clone NameMSMg01-430J24
Chromosome14 (Build37)
Map Location 30,161,828 - 30,162,205
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430J24.T7 (MSMg01no430_j24.b1)MSMg01-430J24.TJ (MSMg01no430_j24.g1)
ACCAG523075AG523076
length795801
length of high quality
(start - end)
377 (54 - 430)320 (79 - 398)
definitionCHROMAT_FILE: MSMg01no430_j24.b1 PHD_FILE: MSMg01no430_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:34 2005CHROMAT_FILE: MSMg01no430_j24.g1 PHD_FILE: MSMg01no430_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGAGTAAGATGGGGGGCGGGTAGAGAAGTCCTATATTCAGAGGATCCGC
GGAATTCCTGGTTTTTCCGCAACACTGACGGCTTCTTTCACAGCCCCCAA
TGGCCAGATTCTTGTCCTTGCCAGGGTAATAACAGGCTGGGTCAAGGGAA
CATCCCCAAACTACTATGCAGGTCAAGGGAACATCCCCAAACTACTACCC
AGGTATCCCACAGTGACACTCTGTTCTACCATCATTATACCCATGCTTCT
ACCTGTACTGGGACCTACTTTACAGGTCTTCCCTCCAGAATTAGAAAGCA
GAAGAATAAAAAAGGAGCCAAGTATTTTTCATTAACTATAAAGATAAAAT
ATAACTGATACAATATTGCACAACGAGGGGCCGTAATATGATTTATTCCT
AACTTATATGACAAAGTTTTCTGGAAATCTTGGCATAGTTAGGATGGTAC
AGTCCTATTTTCTTTTTCCTTATAAAAGTGCCGATCCTGGCTCTGAGCTC
TTTCCATGATGTTTGTTTTCTTTACGCCCTTGTTTACATAGTTCTTATTT
TTAAACTACGGGAGTAACCCTTCTCTGGCTTTGTTCACATTCTCCCTATC
ATATCTTACAGCTCTGTCGTCTTCTCATCTTTCTCTATCATCTCGTTCAC
TGTTTCTCCTTTTCATACTTCTATCTCCTTTCATTCTTCCCTTTTACCTT
TCCCTATACTCTTTCCCCATTCTTCTCCATACACCTCTATTCTCTTTCCC
TTTTCTTTACCTCTCTTCTCCTATACCTCTCTGCCACCCCTTTCN
NCCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAATGGTCAGGCATGGTTCTA
ATCCCATTACACATATGAGTTTATTTAATCTTCACAGTGATATTAGGGAC
AGATATTGCTATTTTCCTGCTTTGCTGAAGTGAAAACTAACATCCAGAAC
TAAGTTACTTGCCAAAGACCACACAGCTGGCAAGTGGGTAAGCCTGGAAT
AGGGCCCATCAACATAGAGATAATATTTATTTTAATAATATGTAAAAATA
ATACAGATGTAGTATAATGTGGTGGAGTCTTCTTTACACATATGAGAGTG
TTTATCTTGGAGTGAACTAACTGGAGCATCCCAGGCTGCTAATCTCTGAG
CCATCACTGAATGATGCTCTGTTTGTGGCTGACAGTTTCAGATGAACCAG
ACAGCTGCTTAATCCTATACGATTATTGCCTTGACTCAAACATGACATTC
ACCCCCCCCCCTTGTTTCATTTAGTCGCCTCTCCCTCTCTTTACTTCCTT
TGTCCCCTCTCCCTCTATTTTCTTTCCCCTGTCACCTCCTTCTCCCCCCC
TCTTCTCTTTCCACCTTTTCCCTTACCCCCTACCTCCCCCCTTTATTTCC
CTTTCCTTCTTCCGTTCTTCCCCTCTCTTTCCCTTCCTTCGTTTTTCCTA
TCTCCCCTCCCTCTTATTCCCCTTCTTCTTTCCCTCTTCCTTTTCCCTCC
TTTTCCTTTCCCCCCCCATTCCTCCTACCCATTTTCCTCCCTCTCTCCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_j24.b1 MSMg01no430_j24.b1 CHROMAT_FILE:
MSMg01no430_j24.b1 PHD_FILE: MSMg01no430_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:34 2005
         (377 letters)



>mm_chr14_30161629_30162405
          Length = 777

 Score =  658 bits (340), Expect = 0.0
 Identities = 368/386 (95%), Gaps = 17/386 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctggttt----ttccgcaacactgacggcttctttcacagcccccaatggccagat 56
           |||||||||||    |   ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 200 attcctggtttaggat---gcagcactgacggcttctttcacagcccccaatggccagat 256

                                                                       
Query: 57  tcttgtccttgccagggtaataacaggctgggtcaagggaacatccccaaactactatgc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcttgtccttgccagggtaataacaggctgggtcaagggaacatccccaaactactatgc 316

                                                                       
Query: 117 aggtcaagggaacatccccaaactactacccaggtatcccacagtgacactctgttctac 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aggtcaagggaacatccccaaactactacccaggtatcccacagtgacactctgttctac 376

                                                                       
Query: 177 catcattatacccatgcttctacctgtactgggacctactttacaggtcttccctccaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catcattatacccatgcttctacctgtactgggacctactttacaggtcttccctccaga 436

                                                                       
Query: 237 attagaaagcagaagaataaaaaaggagccaagtattttt-----cattaactataaaga 291
           |||||||||||||||||||||||||||||||||||          |||||||||||||||
Sbjct: 437 attagaaagcagaagaataaaaaaggagccaagta-----aaagccattaactataaaga 491

                                                                       
Query: 292 taaaatataactgatacaatattgcacaacgaggggccgtaatatgatttattcctaact 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 taaaatataactgatacaatattgcacaacgaggggccgtaatatgatttattcctaact 551

                                     
Query: 352 tatatgacaaagttttctggaaatct 377
           ||||||||||||||||||||||||||
Sbjct: 552 tatatgacaaagttttctggaaatct 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)