BAC Information

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BAC

Clone NameMSMg01-431B06
Chromosome14 (Build37)
Map Location 30,593,642 - 30,722,677
singlet/doubletdoublet
Overlap geneEG665431
Upstream geneCacna2d3, Lrtm1, Ppia-ps15
Downstream geneSelk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431B06.T7 (MSMg01no431_b06.b1)MSMg01-431B06.TJ (MSMg01no431_b06.g1)
ACCAG523420AG523421
length745761
length of high quality
(start - end)		502 (40 - 541)496 (70 - 565)
definitionCHROMAT_FILE: MSMg01no431_b06.b1 PHD_FILE: MSMg01no431_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:14 2005CHROMAT_FILE: MSMg01no431_b06.g1 PHD_FILE: MSMg01no431_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,722,181 - 30,722,677)(30,593,642 - 30,594,134)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTC
CAAGGGTCTCTAGCAGTCATTTGAGTGTGTTAGTGTGGGGAACACAACAG
TTGGAAACCACCCAGCCACCAGTTAGGGTAGAAAAAGAAGGAATGAATAG
ACATGGTGTGTGATTGGCTGACGAACCTGGAGATACAGAACTGTCTTAAG
CAGCTTGGTTGTAGTTAAATCTCCAGGGAGAAGAGCTTGTTTCCTGTTAA
CGTTTGGGGTCACGCCCTACTTCCCCCTTCCCAGGGATCTCTTCTGCCCT
GACCCCTGCAGGCCAAGTAGGTGGTAGCCTTGTCTCTTCACAGACAGTCA
CATTCCACCAATTCTTCTATCTTCAGGTCCCATGGTCCCCAGAGGACTGG
AATTTCCCTGGAAATCTTGTACTAGATGAGGGAAAAGGCTGGAGACTGGT
GACAGTCAGAGGAGGAACTTTTCTTCAGTAAGAGATTTCACACGGTTCTG
ATAACCTGTCAGAACACCCTGCAGGAGAGTCTGGAGCCAAGAGGACCGTG
ATGGGTGGAGCCACTTTTATCATGTGCGTAGCCATGGTACCCTTGCCTTT
CATTGAAACCTAAGCCTCATGGTAGGACCCCAAAATGGATTTGCGTGTGT
GGCGAGGACTTGCTTCCTTCCTTACCTTTCCATAGGGCCCCTCCCCGACC
TTTTCTCTCCTTTCGCCCCTGTCTTTCTTACCTCTACCCTATTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTATAGATGTGCTCCATTGGAAGGTCAAAAA
ACCTGCATCCTAATGTCAGTGATGGATGGCATCATTAGTAACAATGATGG
GGTATAGCACTCACCAGCAAGAAGGCACGCAAACTGCAATACTTCTTCCT
AGGATCTTTTTTACATCTGCCTCCCACAAACTGCTTCCCATTCGGAGGGA
AATGGCCACACCAACCCTTCCTGAAGTGTTTCTTTTAGTTGAATCCAGAT
CCAATCAAGCTGACAAGATTAACCATCATACCCAGTGTTGGTGAGAATAA
ATACCAGAGAAAACATGGAAACATGGGTCCTAGAGCTTTGATGGCATGCT
TCATTTGATTCATCATTCCATCTAGAAACTTATCTAAAGGAAATAATTCC
ACATATGATGCTTTAGCTATAAAGATGTTTGTTACCAGCAGTGGCTCTAT
AACAGCATAAAACTGACAAGAGAAAGTTGGTTCTAACTTTGACTCATCTC
TACACTGAAAGAGCAATTAAAACCATAATGTCCAGTTCTCTTTGAAGACC
TATGAACGGATGATGGAATGCTACAATTCTTTTAAGTTTCAAATGATCTA
TTCCTGGGAATTACCGAGAGTCCCCCCGAAACCCTGAACCTATTTCTCCT
ATATTGTGCTGTTACCTCCCGTTTCTCAATGAAAACTTATTTTCTTCCCT
CTATCAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_b06.b1 MSMg01no431_b06.b1 CHROMAT_FILE:
MSMg01no431_b06.b1 PHD_FILE: MSMg01no431_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:14 2005
         (502 letters)



>mm_chr14_30721976_30722877
          Length = 902

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccaagggtctctagcagtcatttgagtgtgttagtgtggggaacacaacagttgg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gaattccaagggtctctagcagtcatttgagtgtgttagtgtggggaacacaacagttgg 643

                                                                       
Query: 66  aaaccacccagccaccagttagggtagaaaaagaaggaatgaatagacatggtgtgtgat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaaccacccagccaccagttagggtagaaaaagaaggaatgaatagacatggtgtgtgat 583

                                                                       
Query: 126 tggctgacgaacctggagatacagaactgtcttaagcagcttggttgtagttaaatctcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggctgacgaacctggagatacagaactgtcttaagcagcttggttgtagttaaatctcc 523

                                                                       
Query: 186 agggagaagagcttgtttcctgttaacgtttggggtcacgccctacttcccccttcccag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agggagaagagcttgtttcctgttaacgtttggggtcacgccctacttcccccttcccag 463

                                                                       
Query: 246 ggatctcttctgccctgacccctgcaggccaagtaggtggtagccttgtctcttcacaga 305
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 462 ggatcccttctgccctgacccctgcaggccaagtaggtggtagccttgtctctccacaga 403

                                                                       
Query: 306 cagtcacattccaccaattcttctatcttcaggtcccatggtccccagaggactggaatt 365
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 cagtcacattccaccaattcttctatcttcaggtcccatggtccgcagaggactggaatt 343

                                                                       
Query: 366 tccctggaaatcttgtactagatgagggaaaaggctggagactggtgacagtcagaggag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tccctggaaatcttgtactagatgagggaaaaggctggagactggtgacagtcagaggag 283

                                                                       
Query: 426 gaacttttcttcagtaagagatttcacacggttctgataacctgtcagaacaccctgcag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaacttttcttcagtaagagatttcacacggttctgataacctgtcagaacaccctgcag 223

                            
Query: 486 gagagtctggagccaag 502
           |||||||||||||||||
Sbjct: 222 gagagtctggagccaag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_b06.g1 MSMg01no431_b06.g1 CHROMAT_FILE:
MSMg01no431_b06.g1 PHD_FILE: MSMg01no431_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:14 2005
         (496 letters)



>mm_chr14_30593439_30594334
          Length = 896

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   tagatgtgctccattggaaggtcaaaaaacctgcatcctaatgtcagtgatggatggcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tagatgtgctccattggaaggtcaaaaaacctgcatcctaatgtcagtgatggatggcat 263

                                                                       
Query: 64  cattagtaacaatgatggggtatagcactcaccagcaagaaggcacgcaaactgcaatac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattagtaacaatgatggggtatagcactcaccagcaagaaggcacgcaaactgcaatac 323

                                                                       
Query: 124 ttcttcctaggatcttttttacatctgcctcccacaaactgcttcccattcggagggaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcttcctaggatcttttttacatctgcctcccacaaactgcttcccattcggagggaaa 383

                                                                       
Query: 184 tggccacaccaacccttcctgaagtgtttcttttagttgaatccagatccaatcaagctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggccacaccaacccttcctgaagtgtttcttttagttgaatccagatccaatcaagctg 443

                                                                       
Query: 244 acaagattaaccatcatacccagtgttggtgagaataaataccagagaaaacatggaaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaagattaaccatcatacccagtgttggtgagaataaataccagagaaaacatggaaac 503

                                                                       
Query: 304 atgggtcctagagctttgatggcatgcttcatttgattcatcattccatctagaaactta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgggtcctagagctttgatggcatgcttcatttgattcatcattccatctagaaactta 563

                                                                       
Query: 364 tctaaaggaaataattccacatatgatgctttagctataaagatgtttgttaccagcagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctaaaggaaataattccacatatgatgctttagctataaagatgtttgttaccagcagt 623

                                                                       
Query: 424 ggctctataacagcataaaactgacaagagaaagttggttctaactttgactcatctcta 483
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 ggctctataacagcataaaactgacaagggaaagttggttctaactttgactcatctcta 683

                        
Query: 484 cactgaaagagca 496
           |||||||||||||
Sbjct: 684 cactgaaagagca 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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