BAC Information

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BAC

Clone NameMSMg01-432H11
Chromosome14 (Build37)
Map Location 110,153,015 - 110,153,410
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream geneSlitrk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432H11.T7 (MSMg01no432_h11.b1)MSMg01-432H11.TJ (MSMg01no432_h11.g1)
ACCAG524478AG524479
length796764
length of high quality
(start - end)
368 (39 - 406)399 (76 - 474)
definitionCHROMAT_FILE: MSMg01no432_h11.b1 PHD_FILE: MSMg01no432_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:12 2005CHROMAT_FILE: MSMg01no432_h11.g1 PHD_FILE: MSMg01no432_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCA
TTTTAGTTACGATTCTTGCTATTAATGTGCTTTTCCTGTTATTACTAAAC
ATATATGACAACCACTGGTTAATAGTCCACACTTTTGAATAGATCTCTGC
AGATCAATGAAGATGTACTGTCTTGTAAGGATGCTATATAGACAAATAGA
TGACTTCTTAAGTCTTAATGATGATCCTATAAGAATTCCTAAAATTATAT
AGTGATTATTAAGTTCTTTTATAGTGGGACTAGTATTAGGTCCTTTTCTG
ACCACCAACACTGCTTTGTTTTTTCTGTCCATCCTCCCATGTGTTACCAG
TTAATTGCTGTTAATAACCAGACTTTCTCCTTCTCAGAGCACATACCAAG
AGGTTGGACAGCAATTAACCAAAGGTCATAAGAAGGGAACAAATCCTTTA
ATTATAGGTGCTAGGACTAAAGATAAAACATTGACTGCGTTTATCTATAC
CTAACTTCCCTAAGTAACTTATTTTGGGTTTTAAACCCTCCGGTGAACCT
GGGGATCTGCTAACAGTTGTGGGATTTTTCTCCTTCTTTTTCCTTTTCCT
TCCTTCCTGTCTTCATCATTTTTTTGTTTCCACTTCTAATTCCATCCCAA
TATGCTGTTTTCTTTTTCCTTCCTGTTTTCTTCGACCTCCATACTGACTC
CTTGTTCCACCATTTACTTTCCCTATTCACTCTCCTTTCTGTCATTTTTA
CTCCTTTCTCATCGCTCTACTTCATTTACTTCACTCCCTACTTTCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTTTTTTTCTTGATTTTATACC
TCTAGATCTTGATGTTCTTCAATCCACCTGCTTCCAATGAAGGATAAAAG
GACACTTTGAAGGGTCTAAAATTTCAACCTCCCTACCCCATGTCACTTTA
TCTTGGAAAAATTTCCAACATGTTATAAAATGTCAGAATATGTTCTTCTC
ATGTTTTTTTCTTGTTTGACAATGAGTACTGGATTTTGTGAACTTCTTAA
TCCTACAGAAATAAGAAAAATTGCTTTTTTCAGTTAGTTTAGCTATTACT
TTTTCACATGTATTGTCCTACATTCAAGCTTATTCCTTCTTATACAAGAG
TTTGGAATTGCAAACCATAAACAAGTTGCAAAATCATAAGACAATTATTT
ATTAGTAATTTTTATTTTTTATTTTCATGCTCACACTTAAATATTTATAT
AACGCAATCTCTTTTTTCATCCTTCACTTACTATTTTTTCTTCAATTTTT
ACCTAAATTTCTTCCATAATTTACCTTTCTCTGGTTCTTTACCTTCCTTT
TATTTTCTCATCCTTTTTTTACGATTTTTTATCTTTTTCTTATTTTTCAA
ACTCTTTTTTTCTCGTTTCCTCCTCCTTTTTCCTTCTTCTTTCACTTCTC
TACCTTATTCTTCGCATCCCTCCTTCTCTTTCTTTTTTTCCTTCAACTTT
TACTTTCCCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_h11.g1 MSMg01no432_h11.g1 CHROMAT_FILE:
MSMg01no432_h11.g1 PHD_FILE: MSMg01no432_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:12 2005
         (399 letters)



>mm_chr14_110152815_110153610
          Length = 796

 Score =  725 bits (375), Expect = 0.0
 Identities = 392/399 (98%), Gaps = 3/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttttttcttgattttatacctctagatcttgatgttcttcaatccacctgcttcc 60
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 201 acattttttttcttgattttatacctctagatcttgatg---ttcaatccacctgcttcc 257

                                                                       
Query: 61  aatgaaggataaaaggacactttgaagggtctaaaatttcaacctccctaccccatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatgaaggataaaaggacactttgaagggtctaaaatttcaacctccctaccccatgtca 317

                                                                       
Query: 121 ctttatcttggaaaaatttccaacatgttataaaatgtcagaatatgttcttctcatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctttatcttggaaaaatttccaacatgttataaaatgtcagaatatgttcttctcatgtt 377

                                                                       
Query: 181 tttttcttgtttgacaatgagtactggattttgtgaacttcttaatcctacagaaataag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttttcttatttgacaatgagtactggattttgtgaacttcttaatcctacagaaataag 437

                                                                       
Query: 241 aaaaattgcttttttcagttagtttagctattactttttcacatgtattgtcctacattc 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 438 aaaaattgcttttttcagttagtttagctattaatttttcacatgtattgtcctacattt 497

                                                                       
Query: 301 aagcttattccttcttatacaagagtttggaattgcaaaccataaacaagttgcaaaatc 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagcttattccttctcatacaagagtttggaattgcaaaccataaacaagttgcaaaatc 557

                                                  
Query: 361 ataagacaattatttattagtaatttttattttttattt 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ataagacaattatttattagtaatttttattttttattt 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 796
Length adjustment: 9
Effective length of query: 390
Effective length of database: 787
Effective search space:   306930
Effective search space used:   306930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)