BAC Information

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BAC

Clone NameMSMg01-432I10
Chromosome14 (Build37)
Map Location 54,087,156 - 54,087,409
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483
Downstream geneEG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432I10.T7 (MSMg01no432_i10.b1)MSMg01-432I10.TJ (MSMg01no432_i10.g1)
ACCAG524524AG524525
length756836
length of high quality
(start - end)
317 (40 - 356)250 (70 - 319)
definitionCHROMAT_FILE: MSMg01no432_i10.b1 PHD_FILE: MSMg01no432_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:17 2005CHROMAT_FILE: MSMg01no432_i10.g1 PHD_FILE: MSMg01no432_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTTTTCAAATCCTGGATTGTTTTCATTGTTTCATTTAGTCTTATATTTTG
TTTTCTTCAGGATCACGCAAACACTTATTTCATTTAAGATAATTTTCTTT
TTCTTTCTTTCTTTATTAATTTTTTTCACAATCTTTTCTTTGACCCCCCT
CCCCGCTCACCCTTCCACAGTTTCTTATTGCCTGGCCTCTCTAAATTCCT
GGGGCCTCAATTTTCCACTGTTAGGCACCACGTCTCCCACTGAGGCCAGA
TCAGGCAGTCCTTTGCTGTATGTACGTGAGGGTGGGGTGGGTCTGGTGTG
CTTGNANTGNNTCNTGTTTNNTGTTTGTTTTGTGGNTCTGTCTGAGTTNT
CTTTTGGTTCTGGGTTTTTTGTTTTTGTTGGTCTTCCCTTGTCGTCCCCT
CGTTTTCCGTCTTTTCTCCCTTTCCCCTTTGCGCTCTCGTCCTCCCTTTT
TCTGCCTTTGTGTGCTTGTCTCTCTTGTTTCTGTTCTTTTTTTTTTTTCC
CGTTTTTCTTCTTTCTCTCCTTTTCCTCTTTCTCCTTTGTCCTTCTTCCT
TGCCTTCTTTTTTTCTTTGCCTTTTTTCTTTTCTTTCTCCCCCCCTTTTT
GTCGCCTTTTCGCTCCTTTTCTCTTTTTTCTCTTCCGTTTCTTTCCTTTT
CTTTCTTTTCCTCCTTTTTCTNTTCTTCCTTTTCCTTCTTCCTTTTTTCT
CCTTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGATGCACTGGACACTTTTTATTCAGTTCAA
TACATGTTTATTGAGTGACCACAACAGTATTTTCCAGACTGGTCTCATAC
TTCCGGGCTGGAGTAAGCCTCCTTATCTACTCCAGAAGTAACTGAGACAT
TACAATGCTATTTATGGTATAATTTATTGCTCTAGACACTATGACAAGGA
TGGAAGGATTCCATATAAATAAGGGATTTGGGGGATTGTAAATATATTTT
AGAATGGAATTATTTATTTTTTTTTTTNNTTNTNNTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTT
TTTTTTTTTTNTTNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTNTTNTNTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTT
TNTTNNTTTNTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTT
TTTTNNNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNTT
TTTTTTTTTNTTTNTTTTTTTTNNTNTTTTTTTTTTTTNNNTTTNNTTNN
TNTTTTTTTTNTTTTTTTTTTTTTTTTTTTNNTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_i10.g1 MSMg01no432_i10.g1 CHROMAT_FILE:
MSMg01no432_i10.g1 PHD_FILE: MSMg01no432_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:17 2005
         (250 letters)



>mm_chr14_54086956_54087609
          Length = 654

 Score =  433 bits (224), Expect = e-126
 Identities = 245/254 (96%), Gaps = 4/254 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgcactggacactttttattcagttc----aatacatgtttattgagtgaccacaac 56
           |||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||
Sbjct: 454 agatgcactggacactttttattcagttcatggaatacttgtttattgagtgaccacaac 395

                                                                       
Query: 57  agtattttccagactggtctcatacttccgggctggagtaagcctccttatctactccag 116
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agtattccccagactggtctcatacttccgggctggagtaagcctccttatctactccag 335

                                                                       
Query: 117 aagtaactgagacattacaatgctatttatggtataatttattgctctagacactatgac 176
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagtaactgagacattacaatactatttatggtataatttattgctctagacactatgac 275

                                                                       
Query: 177 aaggatggaaggattccatataaataagggatttgggggattgtaaatatattttagaat 236
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 aaggatggaaggattccatataaataagggatttaggggattgtaaatatattttagaat 215

                         
Query: 237 ggaattatttattt 250
           ||||||||||||||
Sbjct: 214 ggaattatttattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 654
Length adjustment: 9
Effective length of query: 241
Effective length of database: 645
Effective search space:   155445
Effective search space used:   155445
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)