BAC Information

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BAC

Clone NameMSMg01-434G16
Chromosome14 (Build37)
Map Location 85,462,022 - 85,462,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434G16.T7 (MSMg01no434_g16.b1)MSMg01-434G16.TJ (MSMg01no434_g16.g1)
ACCAG525966AG525967
length725731
length of high quality
(start - end)
254 (323 - 576)568 (70 - 637)
definitionCHROMAT_FILE: MSMg01no434_g16.b1 PHD_FILE: MSMg01no434_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:50 2005CHROMAT_FILE: MSMg01no434_g16.g1 PHD_FILE: MSMg01no434_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGTGCCATACCGAAGGATTGAGAGGTACCTGTAAAATGTTCAACATC
CTTAATCATCAGAGAAATGCAAATCAAAACAACCTTGAGATTCTATCGAA
TTCCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACCACAGATGGCGA
GGATGTGGGGAAAGAGGAACACTCCTCCATTGCTGGTAGGATTGCAAGCA
CGTACAACCACTCATGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACA
TAGTACTACCAGAATATTTTTTAATACCTCTCATGGACATATACCCAGAA
GAACAAAACCGAAAATCTAGACCCAGATTTAAAAGCATATCTCATGGTGA
TGGTAGAGGACATCAAGAAGGACTTTAATAACTCACTTAAAGAAATACAG
GAGAGCACTGCTAAAGAGTTACAGGTCCTTAAAGAAAAACAGGAAAACAC
AAACAAACAGGTAGAAGTCCTTAAAGAAAAACAGGAAAACACATCCAAAC
AGGTGATGTAAATGAACAAAACCATATTAGACCTAATAAGGGAAGTAGAC
ACAATAAAGAAAACCCTAACTGAGGCAATGCTGGAGATTGAAACCCTAGG
AAAGAAATCTGTAACCATAGATGCCAGCATCAGCCACAGAATACCTAGAG
ATGGAAGAGAGAATCTCAGGTGCAG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAAGCTCATGCCCAGTTATAGATTCTTAGT
AAAAAATAAGTACATTTGATTGATTAAGAGTTACAGGTCACTAGGTTACA
TTTAATTAGTTGTTGGCCTGGTGAGTAGTGGTTTGCTTTTGCAAACTGAC
AACCTGACCCCTTTGCAGAAGACAGCAGTCATCAACTCAATGACCATGGA
AAAGTCATGTTGTCCTACATGAAGCTTTTGCATCTATGTCCTAATGTCTT
TAATATAAGGATATATTCTGTAGGCTACCAAAGGAGAATCATGAACACCC
ATCTAGAAACAAAACCTTAGAGTTATAATCTGCCTTCCCTGCAGGGTAAG
CTAGAAGAATAGTGGCAAAGAAATTGTGGGAGTAGCCAACCAATATCTGA
TTTGAGTTAGGACCACTCCTTAAGACAAAATCCATTCACAATACTACTTG
GTTGACCAAAAACCAGGGACCAGAGAGCCCACAGTCCCAGCATAAAGCTG
CTGGTCTTATAAGCAAAATAAAAATAAAAATAAACAATAAAACTATCAAT
AAAATTTCTCCTAACGATATTATGCTATACTCATAGATCAATGTATTATT
CAATTAACATCAGAAAATCTTCCTCTTGCAACACACACTACAAGCAGAGA
CCCCCAACCAAACACTACCTTGAGAGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_g16.g1 MSMg01no434_g16.g1 CHROMAT_FILE:
MSMg01no434_g16.g1 PHD_FILE: MSMg01no434_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:50 2005
         (568 letters)



>mm_chr14_85462022_85462989
          Length = 968

 Score =  559 bits (289), Expect = e-163
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagctcatgcccagttatagattcttagtaaaaaataagtacatttgattgattaaga 60
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 313 ataagctcctgcccagttatagattcttagtaaagaataagtacatttgattgcttaaga 254

                                                                       
Query: 61  gttacaggtcactaggttacatttaattagttgttggcctggtgagtagtggtttgcttt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gttacagttcactaggttacatttaattagttgttggcctggtgagtagtggtttgcttt 194

                                                                       
Query: 121 tgcaaactgacaacctgacccctttgcagaagacagcagtcatcaactcaatgaccatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgcaaactgacaacctgacccctttgcagaagacagcagtcatcaactcaatgaccatgg 134

                                                                       
Query: 181 aaaagtcatgttgtcctacatgaagcttttgcatctatgtcctaatgtctttaatataag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 133 aaaagtcatgttgtcctacatgaagcttttacatctatgtcctaatgtctttaatataag 74

                                                                       
Query: 241 gatatattctgtaggctaccaaaggagaatcatgaacacccatctagaaacaaaacctta 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gatatattctgcaggctaccaaaggagaatcatgaacacccatctagaaacaaaacctta 14

                        
Query: 301 gagttataatctg 313
           |||||||||||||
Sbjct: 13  gagttataatctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)