BAC Information

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BAC

Clone NameMSMg01-434K14
Chromosome14 (Build37)
Map Location 110,805,366 - 110,805,611
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434K14.T7 (MSMg01no434_k14.b1)MSMg01-434K14.TJ (MSMg01no434_k14.g1)
ACCAG526150AG526151
length724732
length of high quality
(start - end)
592 (68 - 659)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no434_k14.b1 PHD_FILE: MSMg01no434_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:08 2005CHROMAT_FILE: MSMg01no434_k14.g1 PHD_FILE: MSMg01no434_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATTTCCAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCC
AACATCAAAGTAAATGGTGAGAAGCTGGAAGGACAAACAAGCTGAGAAAA
AAAAATAGGAAAACAACACCCATCACAATAGTCGCAAATAATATAAGATA
CCTTGGTGTGACTCTAAATCAGGAAGTGAAAGATATGTATGATAAGAACT
TCATGTTTCCAAAGAAAGAAATCAAGAAAAGATCTCAGAAGATGGAAAGA
TCTCCCATGCTCTTGTATTAGTTATTATGAATATAGTAAAAATGGCTATC
TTGCCAAAAGCTATCTACACATTCAATGCAATCCCCATCAAAATTCCAAC
TCAATACTTCAACGAATTAGAAAGGGCAATTTGCAAATATATCTGGAACA
ACAAAAAACCTAGGATAGCAAAAAACTCTTCTCAAGGATAAAAGAACCTC
TGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGTAATTGTGA
TAAAAACTGCATGGTACTGGTATAGCAACAGACATGTAGACCAATGGAAT
AGAATTGAAGACCCAGAAATAAGCCCACACACCTATGGTCAATTGATCTT
TGACAAAGGAGCTAAAACTACCCAGTTCACAAAAGACAGCATTTTCCAAA
AATGGTGCTGGCACAATTGGCACT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAAGAGGATTTATATATAGAATGTTAAACC
AGAAAATAGTAATTAAAGTATAATATAAAAAAATGAAAATTTATACTCTT
TCTGAGAGGTTGTTTATATATTAGAATACATGTTTACTTTTTAATGTTAT
GCTATAAATATATTTGTTGATTTTTCCAAGCCTGATTATGACCAAAATCT
TTAAAATACATCTTTTTGAAAAAAATCTCTAATTTTACCCAATTTCCACA
TGCATGTAAATATAATAGGTATTTGTATTTAGTTCAGGGTTCTCAAATTA
ATAACTGAGTACCTTATAAGCAATAAATTATTTCTTAACATTCTGGAAGC
TACAAAAGCTTAATGCCATGTATAGACTGATTCAATTAGGCCCTGATTGT
AACAGATTGTGTTTATGTTTTGTTTTTTAGTTTGTTTTTGNTTGTTTNGT
TNNNNTNTNNTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNNTCTTTCTTTTTTNTNTTCTTTCTTCCTCTTTCCTTCCTCTT
CTCTCTTTCTTCTTCTCTCCTTTCTTCTCTCCTCCTCCTCCTTTTTTTTC
TCTTCCTCCTCTCTTTTTTTTTTTTTTCTTTTCCTTTCCCTCTCCTCCTT
CCTCTTTTCTCNTTTTCCCTCCTTTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_k14.g1 MSMg01no434_k14.g1 CHROMAT_FILE:
MSMg01no434_k14.g1 PHD_FILE: MSMg01no434_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:08 2005
         (249 letters)



>mm_chr14_110805090_110805739
          Length = 650

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%), Gaps = 3/247 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagaggatttatatatagaatgttaaaccagaaaatagtaattaaagtataatataaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ataagaggatttagatatagaatgttaaaccagaaaatagtaattaaagtataatataaa 463

                                                                       
Query: 61  aaaatgaaaatttatactctttctgagaggttgtttatatattagaatacatgtttactt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 462 aaaatgaaaatttatactctttctgagaggttgtttatatattagaatacatatttactt 403

                                                                       
Query: 121 tttaatgttatgctataaatatatttgttgatttttccaagcctgattatgaccaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttaatgttatgctataaatatatttgttgatttttccaagcctgattatgaccaaaatc 343

                                                                       
Query: 181 tttaaaataca-tctttttg-aaaaaaatctctaattttacccaatttccacatgcatgt 238
           ||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttaaaatacattc-tcttgaaaaaaaatctctaattttacccaatttccacatgcatgt 284

                  
Query: 239 aaatata 245
           |||||||
Sbjct: 283 aaatata 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)