Query= MSMg01no435_b16.b1 MSMg01no435_b16.b1 CHROMAT_FILE:
MSMg01no435_b16.b1 PHD_FILE: MSMg01no435_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:43 2005
(522 letters)
>mm_chr14_67789922_67790843
Length = 922
Score = 866 bits (448), Expect = 0.0
Identities = 475/484 (98%)
Strand = Plus / Plus
Query: 5 gaattcactgaatcataatttttaaataattgcacttacacttcagagatataattaacc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaagcataatttttaaataattgcacttacacttcagagatataattaacc 264
Query: 65 cctttctgtctttttctctttataaaaatattctcttgcctttatttctcccagaatatt 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttctgcctttttctctttataaaaatattctcttgcctttatttctcccagaatatt 324
Query: 125 aatttttttaaaaaaataattatgtgtctatgcacatgagtgcagtacccacagaagcca 184
||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 325 aatttttttaaaaaattaattatgtgtctatgcacatgattgcagtgcccacagaagcca 384
Query: 185 gaagagggtgtcagatcttatggagctgaagttagaggaagttgtgagctgcccagagtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagagggtgtcagatcttatggagctgaagttagaggaagttgtgagctgcccagagtc 444
Query: 245 agtgttaaaaactgaattcaggtcctttgtgagagctgccagtgcccctggctgttgagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgttaaaaactgaattcaggtcctttgtgagagctgccagtgcccctggctgttgagc 504
Query: 305 catctctccagccctcccccaggataaatacttcaggaagaatacaagaccaaacttcaa 364
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 catctctccagccctcccccagaataaatacttcaggaagaatacaagaccaaacttcaa 564
Query: 365 ccatgttttgggttttaaacaagaacaagttacatcaagttggaaatactgcagaaataa 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccatgttttgggctttaaacaagaacaagttacatcaagttggaaatactgcagaaataa 624
Query: 425 cttttatttctggatcatttgagaataaattatgggacaaagtctatatatgtatataca 484
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 625 cttttatttctggatcatttgagaataaattatgagacaatgtctatatatgtatataca 684
Query: 485 tata 488
||||
Sbjct: 685 tata 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_b16.g1 MSMg01no435_b16.g1 CHROMAT_FILE:
MSMg01no435_b16.g1 PHD_FILE: MSMg01no435_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:43 2005
(448 letters)
>mm_chr14_67929036_67929883
Length = 848
Score = 733 bits (379), Expect = 0.0
Identities = 440/479 (91%), Gaps = 36/479 (7%)
Strand = Plus / Minus
Query: 1 catctctcctggcactaatttcctagtccatctataaactggagggtgaaaacattacct 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 647 catctctcctggcactaatttcctcgtccatctataaactggagggtgaaaacattacct 588
Query: 61 gtttctcggggttgtggtaagcgtccacgggctgatgtgttaagcagagcttactttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtttctcggggttgtggtaagcgtccacgggctgatgtgttaagcagagcttactttggg 528
Query: 121 ggctaatacacagaaaatgttggccactattatttattattctcacaacaggacttagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggctaatacacagaaaatgttggccactattatttattattctcacaacaggacttagga 468
Query: 181 aaagatttttatgagtcctggaatcaacaaggaagtggccacacagagagatggcaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaagatttttatgagtcctggaatcaacaaggaagtggccacacagagagatggcaaaat 408
Query: 241 aacacagcccttttcatgccattgcttcttcagactcctgacctgcttaggaaaggaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aacacagcccttttcatgccattgcttcttcagactcctgacctgcttaggaaaggaaga 348
Query: 301 -cccccccacacacacacatcacacaggcatacacacacacacacacacacacacac--- 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccccccccacacacacacatcacacaggcatacacacacacacacacacacacacacaca 288
Query: 357 ---------------------agcccagaggcagatgtaaaccgtagagctagctgagga 395
|||||||||||||||||||||||||||||||||| ||
Sbjct: 287 cacacacacacacacacacagagcccagaggcagatgtaaaccgtagagctagct---ga 231
Query: 396 ga-gct-atcc----accctctgtggtctcctgataaacctgaaagctacctctagatt 448
|| | | | || | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 230 gatg-taaaccgtaga-cctctgtggtctcctgataaacctgaaagctacctctggatt 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
