BAC Information

Click to search

BAC

Clone NameMSMg01-435C10
Chromosome14 (Build37)
Map Location 111,060,278 - 111,060,733
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435C10.T7 (MSMg01no435_c10.b1)MSMg01-435C10.TJ (MSMg01no435_c10.g1)
ACCAG526522AG526523
length755781
length of high quality
(start - end)
451 (65 - 515)237 (75 - 311)
definitionCHROMAT_FILE: MSMg01no435_c10.b1 PHD_FILE: MSMg01no435_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:46 2005CHROMAT_FILE: MSMg01no435_c10.g1 PHD_FILE: MSMg01no435_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTATATTTCAGGAGATAAAATTCTGCAATTATGCCAGGCAGTGGTGG
TGCATGCCTTTAATCACAGCACTTGGAGGGCATAGGCAGGTGAATTTCTG
AGTTTTAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCT
ACACAGAGAAACCCTGTCTCGAAAATCAAAAAAAAAAAAAAAAAGAAGAA
GTAGAAGAAAGAAAAAACAAAACAAACAAACAAACAAAAAACCTCTAACT
TGATAGCATCAATACTTTGTGCGATATTTTATTTTTATTTGTATAAAATA
ATATTTATTAAATATAAATATTCCTATGCTTTGAAAACAGTAATAAAATC
AAAATTTTAGTGCTGAGTCGACTCAAGGTAATAGTTTTAGAGACACATTA
TATTTTTCTCCATTTTAGAATGTACCAGTATAATGATTTATCTGTACCTT
AAAAATATTATAGAAACATGACACAATTCATTTAGTCACTGAAGAGTGCT
CATATACGTTGTTATTTATTTAGCTTTAGATATTGGCCCACATTCTTTTT
CCAACTCTTAAAGATTATTCCCTTATAGCATTCTAACATTCTATCCAATG
GCCAGTCTTTTAATTCTCTCCGTTGGAGCTTTTGATTTTCCACTCTTAAC
CAGTTTACACCATTTCCTTCTCTTAGGTTTCTGAGTTATTGCCTTTTCTT
CTTGC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTAACTCTGGATCCCATTTTTTA
ATTGGGTCATTTGATTTTTAGAGTCTAGCCTTTTGAATTCTTTATATATT
TTGGATATTAGCCCTTTATCAGATGTAGGGTTAGTGAAGATCTTTTCCCA
ACTTGTACATTGCCATTTTTTCTTATTGGCAATATCCTTTGTCTTATAAA
AGCTTTTCAGTATTGTGAGATTTCATTTGTCACATTTTTGTCTTAGAACT
TGAACCACTGGATTTTTGTTCAAGAATTTTGCCCTTGTGCCAATGCATTC
AAGGTTATTTCCCATTTTCTCTCTACCACAAGGACAAGTACTCCACTATA
TTAATATCAACCCCACCCCGTATAGCCTGAAGCTGGAAACAATCCAGATG
TCCCTCAACTGAATAATGAATATAGATTATGTGGTTCATTTACTTCCCGC
CCCTATTTTTATTATTCTCCCACTCTCGTCCTTCCTGAATCCTGCATGCT
TCTGTTTTGTTTTCTTCACTATTTTTTCCCCGCTTTTTTGGCGCCCCCCT
CCTTTCTTCCCCCCGCCTTTCTTTTCCCCCCCTCCGCTCTCTTTTCTTCC
CCCCTCTCTTTATTTATTGGCCCTAACCTTTACATTTCCCTCCGGTTTAC
CCTTTTTACTCTTGTTTCGTCTTTTTCCCTTATCCCCCTCCCTTTTTCAC
CTATCTTTACTCTTAATTTTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_c10.b1 MSMg01no435_c10.b1 CHROMAT_FILE:
MSMg01no435_c10.b1 PHD_FILE: MSMg01no435_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:46 2005
         (451 letters)



>mm_chr14_111060083_111060933
          Length = 851

 Score =  839 bits (434), Expect = 0.0
 Identities = 449/456 (98%), Gaps = 5/456 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagataaaattctgcaattatgccaggcagtggtggtgcatgcctttaatcacagcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gagataaaattctgcaattatgccaggcagtggtggtgcatgcctttaatcacagcactt 255

                                                                       
Query: 61  ggagggcataggcaggtgaatttctgagttttaggccagcctggtctacagagtgagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 256 ggagggcataggcaggtgaatttctgagttttaggccagcctggtctacagagtgggttt 315

                                                                       
Query: 121 caggacagccagggctacacagagaaaccctgtctcgaaaatcaaaaaaaaaaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caggacagccagggctacacagagaaaccctgtctcgaaaatcaaaaaaaaaaaaaaaaa 375

                                                                       
Query: 181 ----gaagaagtagaagaaagaaaaaacaaaacaaacaaacaaacaaaaaa-cctctaac 235
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 376 agaagaagaagtagaagaaagaaaaaacaaaacaaacaaacaaacaaaaaaacctctaac 435

                                                                       
Query: 236 ttgatagcatcaatactttgtgcgatattttatttttatttgtataaaataatatttatt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttgatagcatcaatactttgtgcgatattttatttttatttgtataaaataatatttatt 495

                                                                       
Query: 296 aaatataaatattcctatgctttgaaaacagtaataaaatcaaaattttagtgctgagtc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaatataaatattcctatgctttgaaaacagtaataaaatcaaaattttagtgctgagtc 555

                                                                       
Query: 356 gactcaaggtaatagttttagagacacattatatttttctccattttagaatgtaccagt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gactcaaggtaatagttttagagacacattatatttttctccattttagaatgtaccagt 615

                                               
Query: 416 ataatgatttatctgtaccttaaaaatattatagaa 451
           |||||||||||||||||||||||||| |||||||||
Sbjct: 616 ataatgatttatctgtaccttaaaaaaattatagaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)