BAC Information

Click to search

BAC

Clone NameMSMg01-436E19
Chromosome14 (Build37)
Map Location 78,166,999 - 78,349,473
singlet/doubletdoublet
Overlap geneGm1587, Dnajc15, Epsti1
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
Downstream geneAU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436E19.T7 (MSMg01no436_e19.b1)MSMg01-436E19.TJ (MSMg01no436_e19.g1)
ACCAG527400AG527401
length761774
length of high quality
(start - end)		589 (91 - 679)461 (76 - 536)
definitionCHROMAT_FILE: MSMg01no436_e19.b1 PHD_FILE: MSMg01no436_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:20 2005CHROMAT_FILE: MSMg01no436_e19.g1 PHD_FILE: MSMg01no436_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,348,903 - 78,349,473)(78,166,999 - 78,167,396)
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAAAGTTACCCCTCGGTATTAGAGATCATAATAGGATTTTGTC
TACTTTTTGTATCCTACATACATTTCAAGTCATTGTTACTAAAGATTTAT
GTTTCATTTTCTTTGAGATTATGTATTTTATCTTCATAAAATATTGAATG
CTTTTCACCTAGAATTCAATTTGTCTCATATTAATATTGCTACATCTGCT
CTCTTTTGTTGGCATTTATGGATATATTTTCCATGCTTTTGAATTTTAAC
TCTTTTATTGATGTCCCTCATAATAGCACAGTTAGATATTTATTTTTATG
CTGCCCAAGAGGACTTTTAGAAATATATAAACATGATTTATATACCTTTT
ATAAGCATTAGCTTGTTAGATTTAATATTTTCCTTTCTTGTGTTTTACTG
TAAAAATTCAACATTTTCTGCATTTTGTGTGGTGACCACATTGTCACTTG
CCCCACTTTCTCCTGGTTTTCTAACCCAGCTTGTACAAAGGGTTAACGTG
CACAGTAAACACATGTGCAGCAAGCTTTCCATCAGCATCTGGAGTCCACA
GGCCTCTGAGCATATGCCAAAGGGAACGGAGCTTAAGCCCAGCCCAGCCC
CTTCTCTCCCATTTGTGTCTCTTCTATGGTAAGAATCCTCCAGGCTCTGA
GCTTTATCCTGTTCTTGCTTTAGGAATACATGAGAGAGGGGAAAGAACAC
AAGGAAAGGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCATTAGGAAGCTAGACAGATGT
CAGAGGGCTTGGAGGCCATTGAGATGGACCCTGCCTCCTGTTTCCTTGGA
AACTCTAGAAAAGGAAAATCCTTAGCATTTAAATGAGCATAGGACAAGTT
GGAGGAATCCAGGCTTCTGTGAGGCTCTTTAAGGCAAAGCACTCTTCCTG
CTAAGAAGAGCAAATCTAAGATCTACCTCTGGCCATGCGTGTAGACCTGA
CATCCCAAGGTACCCCAACCATTACACACTATCATTTTTTTCTCCTTTTA
AAAGTACATGGCTAAACGAGGCCATGACTGCTCCTAGGTATGGTTGAGGA
GAAGATATATTGTAGATATAAGACATCTGGAAGAATCCAGAGCCTGAACT
GGGCCAGCAGTATGAACTGGGTCATAAAAGGAGAGGGGTTAGACTTAGGA
GAGTTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTTCCTCC
TTTTTTTTTTTTTTCTCTCTTTTTATCCCCTCTATCCTTTATCCCTCCTC
CTTTTTAATATCTCTTCTTCTTCTCTTCTCTATTATTTTCTCTTCTTTTC
TTCCCTTCTTTTTTATTATTCCTCTTCTTTTTTTCGTATTATTTTCCCCA
CTCTCTTCATCCTTTTCTTCACCTCTCATTTTCTTATTCTATCTCTTCTT
TTTTATCTTCTCTTCTTCTACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_e19.b1 MSMg01no436_e19.b1 CHROMAT_FILE:
MSMg01no436_e19.b1 PHD_FILE: MSMg01no436_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:20 2005
         (589 letters)



>mm_chr14_78348485_78349473
          Length = 989

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  gtatcctacatacatttcaagtcattgttactaaagatttatgtttcattttctttgaga 78
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 989 gtatcctacatacatttcaagtcattgttactaaagatttatgtttcattttttttgaga 930

                                                                       
Query: 79  ttatgtattttatcttcataaaatattgaatgcttttcacctagaattcaatttgtctca 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ttatgtattttatcttcataaaatattgaatgcttttcacctagaattcaatttgtctca 870

                                                                       
Query: 139 tattaatattgctacatctgctctcttttgttggcatttatggatatattttccatgctt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tattaatattgctacatctgctctcttttgttggcatttatggatatattttccatgctt 810

                                                                       
Query: 199 ttgaattttaactcttttattgatgtccctcataatagcacagttagatatttattttta 258
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttgatttttaactcttttattgatgtccctcataatagcacagttagatatttattttta 750

                                                                       
Query: 259 tgctgcccaagaggacttttagaaatatataaacatgatttatataccttttataagcat 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgctgcccaagaggacttttagaaatatataaacatgatttatataccttttataagcat 690

                                                                       
Query: 319 tagcttgttagatttaatattttcctttcttgtgttttactgtaaaaattcaacattttc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tagcttgttagatttaatattttcctttcttgtgttttactgtaaaaattcaacattttc 630

                                                                       
Query: 379 tgcattttgtgtggtgaccacattgtcacttgccccactttctcctggttttctaaccca 438
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 629 tgcattttgcgtggtgaccacattgtcacttgccccactttctcatggttttctaaccca 570

                                                                       
Query: 439 gcttgtacaaagggttaacgtgcacagtaaacacatgtgcagcaagctttccatcagcat 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcttgtacaaagggttaacgtgcacagtaaacacatgtgcagcaagctttccatcagcat 510

                                                                       
Query: 499 ctggagtccacaggcctctgagcatatgccaaagggaacggagcttaagcccagcccagc 558
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 509 ctggagtccacaggcctctgagcatatgccaaagggaaccgagcttaagcccagcccagc 450

                                          
Query: 559 cccttctctcccatttgtgtctcttctatgg 589
           |||||||||||||||||||||||||||||||
Sbjct: 449 cccttctctcccatttgtgtctcttctatgg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_e19.g1 MSMg01no436_e19.g1 CHROMAT_FILE:
MSMg01no436_e19.g1 PHD_FILE: MSMg01no436_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:20 2005
         (461 letters)



>mm_chr14_78166799_78167659
          Length = 861

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcattaggaagctagacagatgtcagagggcttggaggccattgagatggaccctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcattaggaagctagacagatgtcagagggcttggaggccattgagatggaccctgcc 260

                                                                       
Query: 61  tcctgtttccttggaaactctagaaaaggaaaatccttagcatttaaatgagcataggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgtttccttggaaactctagaaaaggaaaatccttagcatttaaatgagcataggac 320

                                                                       
Query: 121 aagttggaggaatccaggcttctgtgaggctctttaaggcaaagcactcttcctgctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttggaggaatccaggcttctgtgaggctctttaaggcaaagcactcttcctgctaag 380

                                                                       
Query: 181 aagagcaaatctaagatctacctctggccatgcgtgtagacctgacatcccaaggtaccc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagagcaaatctaagatctacctctggccatgcgtgtagacctggcatcccaaggtaccc 440

                                                                       
Query: 241 caaccattacacactatcatttttttctccttttaaaagtacatggctaaacgaggccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccattacacactatcatttttttctccttttaaaagtacatggctaaacgaggccat 500

                                                                       
Query: 301 gactgctcctaggtatggttgaggagaagatatattgtagatataagacatctggaagaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gactgctcctaggtatggttgaggagaagatatattgtagatatgagacatctggaagaa 560

                                                 
Query: 361 tccagagcctgaactgggccagcagtatgaactgggtc 398
           ||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tccagagcctgaactgggctagcagtatgaactgggtc 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |