BAC Information

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BAC

Clone NameMSMg01-437A08
Chromosome14 (Build37)
Map Location 101,954,634 - 101,954,924
singlet/doubletsinglet
Overlap geneTbc1d4
Upstream geneEG668684, 1700110M21Rik, LOC100043421, LOC382936
Downstream geneCommd6, Uchl3, Lmo7, LOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437A08.T7 (MSMg01no437_a08.b1)MSMg01-437A08.TJ (MSMg01no437_a08.g1)
ACCAG527951AG527952
length1,345819
length of high quality
(start - end)
---298 (67 - 364)
definitionCHROMAT_FILE: MSMg01no437_a08.b1 PHD_FILE: MSMg01no437_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:15 2005CHROMAT_FILE: MSMg01no437_a08.g1 PHD_FILE: MSMg01no437_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTGTCGGCCACAGCTATTATGTATTCGGCGCACAGACTGCAGTAAGTGT
GCGTATACTCGTTGTGATGTGTCCTCGCTCACACAGCGTTCCTTCGTATA
CACCCCATATAGTGTTGATATTGACGCATCGATTATGTAGACTATATTAT
TATATACACGATATCAATGACGAATAACGAATGATATCATATGACGTGAG
CGGCAGCGGCGCGTAGNAGACAGTCAACCCATCCACTTAATGCTGCGCGG
TATCTGTGCTCGACGTAGTGACTATAGAGTAGCCTGCTAGAGGTTCCCAT
GCAGATCGTCCGGCAGTCTGTATCAGTGCGCGAGACGCCGTCTTATTCGT
ATACACCTACACGTATATATCGCGCGTATAAGATGCTTATACGTCACGTG
TATCGTTATTGTATTGTGCCGCTGCTCGCCTCAGTATGCTCANATCGCGA
GGCATGTCGCCGTGCATGAGCACCGCGATCAAGTTATGTATTNACAGNAC
AAGCGTGAGCCTGACGCGCTAGTTATTTGTATAAGATATGTCTGGAGCGT
ATGATCGGTCGATCGATATCATTGTAGCGACGTTCGACCGCATAGTACGA
GAGCCAGTATCAGATGCTGTTAGCGTCGAGCGTAACCGGACCTGTATGTA
AGCGGTCTGCGGTAGTCATCTCAGTATCGAGCGACAGAACGATGTAAGCG
CGTGGTGAGTGATCTATGACATCATGTATCGTATACCACCACCTTGTGAG
TACTGACTATACACGGATTGGCGATCGATATCGCTGAGGCATGCGTCTCT
GTAATAGTCATAGATAGCACGTCCTGGGCCCTCGCAGCTCATGAATATTG
TGATATCGCGTATACGCACACGAAGCTACGTAGCAGTAGAGCGTCGATAC
AGAGATAGATTCTCGATCAACTGTNGTTTTGTAATATCGCGACACACGTG
ACTCCCATAGTCGTTATATGTCGACGACNCGGTGTGATCTCTCCGGCGGC
AATGTGATTATTTGGGCAGTATAATATGTATCGATCCCTAGACACACGAA
AGTGTTGATGCTTACGTGCTCGTTAGCTGCTGCGCTAGCTAGCAACCACT
CCCAGTAGTGTAGACATGATACACGNTATACCATCTTACAGTCAACCGAT
CGCCACTGTTTTNTACCACCACGCGCGTATTGACGCGCGNTACGGTGCAC
GGTATGCGACATACGACTGAGTATATGTATGTAGTGCAATGCTCACTCGC
TCCGCGCCACACGCGATCGGATATAAGCTCATTCGTGGTACGTTGGTATC
TGATAGATACAGCCCGATGCGCGCTGGTGAGTGCTGTTACTATNN
NCCACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXNATTCAGGAATTCTTCACTGTAAGTGCAAGGGGT
CCAGCCCTTCCAGGGCTGCTGTCTGGAGGTAGCAACTCACACAGGCGATG
AACTTGAGAGTGAATGCAGGAGGAATGGGAAGTGTGTGTAGGGAGGCCCC
TGGCTTCAAGATGGTGCCTCAGTGGTGTGGCTGTAACTTCCTGCTCTGAA
GGTTCAGCCTTAATATTATCCTTAAAGTTCACAGGTCTGAAAAGATGTGT
CTGGGGTCTGGTCCCTCATTTGTTTTTTGTTTTTTGGGCTTTTGTTTGCG
GATGTCTTTCCATCTCCTTTATTTCCCTCTTTAGCTTGGCGTGAGCGATG
TCCTTCGTTTCGCACAGCCTCGCCCCCCGCCTTCTGTTTCTTTTTCGTTG
CTTCTTTCCTCCCCCTTTCCTTTCTTCTTTCTTTCTTTTCTCTTTTTTCC
CCCTTCCCCTCTTTTTTTTCCCTTCTGTTTTTTTTTTCCTTTCTTCTTCC
CTCCCCCCTTTACTCTCTCCTCCCCTCTTTATTTTTTCCCCCTTTCTTCT
GCTCTTTTTTCCTTTTCCTCTTCCTCTGCTTACTTCCCTTTTCTCTTTCT
CCTCCTTCTCCTTCTTCCTTTTCTCGTCTTCCCTTCGTTCCTCTCCTTAC
CTCTTTTCTCCCCTCTTTTTCCCTTATCTTCTTTTCTCTTACCTCTTCTC
CCATACTCTGTTCTCTCCTCTCTCCCCCTCTTCTTTTTTCTTTCTATTTC
CTTACATCTCTCCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_a08.g1 MSMg01no437_a08.g1 CHROMAT_FILE:
MSMg01no437_a08.g1 PHD_FILE: MSMg01no437_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:15 2005
         (298 letters)



>mm_chr14_101954427_101955124
          Length = 698

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcttcactgtaagtgcaaggggtccagcccttccagggctgctgtctggaggtagc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 498 gaattcttcactgtaagtgcaaggggtccagcccttccagggctgctgtctggaggtggc 439

                                                                       
Query: 68  aactcacacaggcgatgaacttgagagtgaatgcaggaggaatgggaagtgtgtgtaggg 127
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 438 aactcacacaggcgatgaacttgagagtgaatgcaggaggaatgggaagtgtgtataggg 379

                                                                       
Query: 128 aggcccctggcttcaagatggtgcctcagtggtgtggctgtaacttcctgctctgaaggt 187
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aggcccctggcgtcaagatggtgcctcagtggtgtggctgtaacttcctgctctgaaggt 319

                                                                       
Query: 188 tcagccttaatattatccttaaagttcacaggtctgaaaagatgtgtctggggtctggtc 247
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttagccttaatattatccttaaagttcacaggtctgaaaagatgtgtctggggtctggtc 259

                                                              
Query: 248 cctcatttgttttttgttttttgggcttttgtttgcggatgtctttccatc 298
           |||||||||||||||||||   ||| |||||||||||||||||||||||||
Sbjct: 258 cctcatttgttttttgtttgaagggtttttgtttgcggatgtctttccatc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)