Query= MSMg01no437_f18.b1 MSMg01no437_f18.b1 CHROMAT_FILE:
MSMg01no437_f18.b1 PHD_FILE: MSMg01no437_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:43 2005
(580 letters)
>mm_chr14_105145306_105146286
Length = 981
Score = 1056 bits (546), Expect = 0.0
Identities = 568/576 (98%), Gaps = 3/576 (0%)
Strand = Plus / Minus
Query: 7 cggaattcttttaagattttaacttagggtgaatgatctgtaaggagtcactctatggac 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 781 cggaattcttttaagattttaacttagggtgaatgatctgtaaggagtcactctatgggc 722
Query: 67 tcagtggcttcatgcttgtggtacaggtgtgagggcctcagggttttgttgttgtcattt 126
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 721 tcagtggcttaatgcttgtggtacaggtgtgagggcctcagggttttgttgttgtca-tt 663
Query: 127 ttttattttgttttgtttttatctccattgctcatgtaaaaagccaggcatgaga--gtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 662 ttttattttgttttgtttttatctccattgctcatgtaaaaagccaggcatgagagtgtg 603
Query: 185 tatactgtcaactcagattcttgcttctggttgtttattgctgagtcatagcttctctct 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 602 tatactgtcaactcagattcttgcttctggttgtttatcgctgagtcatagcttctctct 543
Query: 245 taaaggtagagcttttttatgactgactcatagaacagccttggctggttctaggcttcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaaggtagagcttttttatgactgactcatagaacagccttggctggttctaggcttcc 483
Query: 305 tggtgttgctgtagtgccccctctaaacctgacggcagagtgcctggggtccttccagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggtgttgctgtagtgccccctctaaacctgacggcagagtgcctggggtccttccagca 423
Query: 365 cctggcttctacttacatggtctgtgctatttgatgctacagtgggtagccagcagtgta 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cctggcttctacttatatggtctgtgctatttgatgctacagtgggtagccagcagtgta 363
Query: 425 agatcccttggaaagagttcatttctttcacaaaacagtgtctaaacttaaaagtcatct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agatcccttggaaagagttcatttctttcacaaaacagtgtctaaacttaaaagtcatct 303
Query: 485 catatttgagcaatgtcatcttacttcctaaataagaccaccaagtcttctcctccatat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 catatttgagcaatgtcatcttacttcctaaataagaccaccaagtcttctcctccatat 243
Query: 545 ggaagtaggttacctatctcttaaagattttgtgtc 580
|||||||||||||||||||||||||| |||||||||
Sbjct: 242 ggaagtaggttacctatctcttaaagtttttgtgtc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_f18.g1 MSMg01no437_f18.g1 CHROMAT_FILE:
MSMg01no437_f18.g1 PHD_FILE: MSMg01no437_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:43 2005
(482 letters)
>mm_chr14_104954803_104955682
Length = 880
Score = 803 bits (415), Expect = 0.0
Identities = 465/483 (96%), Gaps = 4/483 (0%)
Strand = Plus / Plus
Query: 1 tttttaatgtgcaacttgtttttttttt-cagtgtaaaatttgaggatttcattattact 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 201 tttttaatgtgcaacttgtttttttttttcagtgtaaaatttgaggatttcatcattact 260
Query: 60 tgatgacatttgccctcacgtatgtcttagcttagtttgggttgctataactggaggtat 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgacatttgccctcaggtatgtcttagcttagtttgggttgctataactggaggtat 320
Query: 120 tctagcttagagacaggatgaaaggcctgagatctggacctagagtaccaccatgggatg 179
||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 321 tctagcttagaaacaggatgaaaggcttgagatctggagctagagtaccgccatgggatg 380
Query: 180 aagaggggacagacctcttccagatgaggacctttgtgctacctcacatgagggcaatac 239
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gagaggggacagacttcttccagatgaggacctttgtactacctcacatgagggcaatac 440
Query: 240 ttcagcatatgattttggagaggacacaaatgttcagtctaaaatatcacactttgtggg 299
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ttcagcatatgaatttggagaggacacaaatgttcagtctaaaatatcacattttgtggg 500
Query: 300 ctatttatatcattcaacatttattctttcataagtggctacccaattatattagtactc 359
||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 501 ctacttatatcattcaacatttattctttcataagtgtctactcaattatattagtactc 560
Query: 360 ttaacttattttaaaaagtacaaatataaagaaggcaaacgtaatataactgtcctcttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacttattttaaaaagtacaaatataaagaaggcaaacgtaatataactgtcctcttt 620
Query: 420 ccttctcctaggtagaattaaaatgattagctatttaaaaaaaaagatttatttgtatat 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 ccttctcctaggtagaattaaaatgattagctatt---aaaaaaagatttatttgtatat 677
Query: 480 gtg 482
|||
Sbjct: 678 gtg 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 880
Length adjustment: 10
Effective length of query: 472
Effective length of database: 870
Effective search space: 410640
Effective search space used: 410640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
