BAC Information

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BAC

Clone NameMSMg01-437N22
Chromosome14 (Build37)
Map Location 117,993,136 - 117,993,558
singlet/doubletsinglet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437N22.T7 (MSMg01no437_n22.b1)MSMg01-437N22.TJ (MSMg01no437_n22.g1)
ACCAG528599AG528600
length761792
length of high quality
(start - end)
---423 (71 - 493)
definitionCHROMAT_FILE: MSMg01no437_n22.b1 PHD_FILE: MSMg01no437_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:25 2005CHROMAT_FILE: MSMg01no437_n22.g1 PHD_FILE: MSMg01no437_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCTATACACTCCTAAGTTCCAGGACCGCGGAATTCTATGTTC
TGTTGTCTAGCACCCTGANATGNTTATAATATGTTTATAATGTTATGATT
ATAATTATCCCTCTCNANANAAACCATAATTTGTTTTAAGACCTTGGCAA
ATTTGCAGGNTGTTGGAGAAGTTAACCTTTGGATTTTTATTATTTATANG
GAAAGAGAAACCTTACANCGAATGGGNTGCGAACCAAGGGCCGGGGGCGG
GGCCAAATATACCAGGCCCCAAAATTTAAACCCCCCGGGGGAAAAAAGGG
GCCCCACNNNCCCCCNCCCCCCCCCCNCCCCCCNAAAAACAAAAAAAAAA
ACCCCCCGGGCTTTTGGAAAAATTAAACCGCGGCAAAAAAATTCAAGAAA
CACCCCCCCCCCCGGGNCCCCCCCCCCAAAAACCCCCAAAAAAAAACNCC
CCCCCCCCCCNCNTTCCAACNNNNCCCCAACCCACCCCCCCAAAAAAAAA
AACCCCCCCCCCCCCCAAAAAAAAAAACCCCCCAAAAAAAAAAAAAAAAA
ACCTTTTTTTCCCCTTTCTCCCCGAAAAAAACCCCAACCCCACAAAAAAA
ACCCCCCCCCCCCNCCCCCCNNCCCACCCCCACAAAAAAAAAACCCCCCC
CCCCCCGCCACACAAAACAACACCCCCCCCCCCCCCCCCCAAAAAAAAAA
AAAAACCCCCCCACACCCCCCCCCCCCCCCCCACAAATTTCTTCTTTTTT
TGTTTTTTTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATATATCTTTTACAATTCCTACCAATCCTC
TATAGTAGATATTTTAAACTGATATTCATCATGGTCACATTTTCTTTATT
ACACTGTCATTTCTCAGCCTCCAGACTCAATTGCCCAAATAAGAGTAACA
TTCATAGAGACACACTTCATTGCTATATACAGGACCTATGGGAGATGCTC
ACATAAAGATGAGTGTTCAGAGAACTCCTGATAGGAGTGTTATTCAAGGC
CACAGCTATATGTAGAGGTGGCCATTGTATGTGCTGGTCTCAAGAGATTT
CAGTCTTTGCTGACATCCACAGACACAAGGCTCACCCTTGCTTATTTATA
CAAGTTTCAGTTTTGTCAACCAAGTGTATAAACTTGGTTTAAAATTACAA
TTTTGAACACATTGTTTCAAATGCAGAAAAATCAAGCTATTAGTGCCTTG
AAAGGAAATCAAGTTGCATCGCTTTGACATTTAAAATGTATACCGATCAT
TTATAAATATTTGCTTGGTCATTCTCCCAGATCTCAGAAAATATACTCCG
ATACCTATATGGAGATCTCTACCATGATGCCTTTATCAAAAGAAAGAAGT
GCTCCAATAACGTGTAAACATGCTCCCTGTGGAGGCTGAAAAAATGCACC
CCTGTTTAATGGAGCGGTTGAAGGGGGGAACCCATCTCCTGGGGCCGCTT
GTGTGCGCCTATGGTTTTACCCCCGGCCCCTTTTGGAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_n22.g1 MSMg01no437_n22.g1 CHROMAT_FILE:
MSMg01no437_n22.g1 PHD_FILE: MSMg01no437_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:25 2005
         (423 letters)



>mm_chr14_117992936_117993758
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatatcttttacaattcctaccaatcctctatagtagatattttaaactgatattcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atatatcttttacaattcctaccaatcctctatagtagatattttaaactgatattcatc 564

                                                                       
Query: 61  atggtcacattttctttattacactgtcatttctcagcctccagactcaattgcccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atggtcacattttctttattacactgtcatttctcagcctccagactcaattgcccaaat 504

                                                                       
Query: 121 aagagtaacattcatagagacacacttcattgctatatacaggacctatgggagatgctc 180
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 503 aagagtaacattcatagagacacacttcattgctatatacaggaccaaggggagatgctc 444

                                                                       
Query: 181 acataaagatgagtgttcagagaactcctgataggagtgttattcaaggccacagctata 240
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 atataaagatgagtgttcagagaactcctgatagtagtgttattcaaggccacagctata 384

                                                                       
Query: 241 tgtagaggtggccattgtatgtgctggtctcaagagatttcagtctttgctgacatccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtagaggtggccattgtatgtgctggtctcaagagatttcagtctttgctgacatccac 324

                                                                       
Query: 301 agacacaaggctcacccttgcttatttatacaagtttcagttttgtcaaccaagtgtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agacacaaggctcacccttgcttatttatacaagtttcagttttgtcaaccaagtgtata 264

                                                                       
Query: 361 aacttggtttaaaattacaattttgaacacattgtttcaaatgcagaaaaatcaagctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aacttggtttaaaattacaattttgaacacattgtttcaaatgcagaaaaatcaagctat 204

              
Query: 421 tag 423
           |||
Sbjct: 203 tag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)