TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCTTTTCACAGATAGTCTTTCATAAACCAACAGAGTTATCCTCT
TTTAAACCATCTCTCCAAAAAGAACAAAAATAAGCAATAATTTAAGAAAT
AGGGCTTCATCTTTCACTTTGAATCTGTGATGTTTTCACTGATAAATGCA
AACCATTTCTTTCTGTTTTATTTTCTTTCTTTTTTTTTTGTAGGAGAAAA
AAATAGTTAATCAGATGAAAAAGTCATTAAGTATAAGTGCATTTGGAAAT
GGGGAACTGTCAGATACACAAGTAAAGCAGCCAGGCGGGTGGGGGCTGGG
AAGGGGGGGATGGTGGAGNNNNNNNNNTNNNNNNTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTNNTNTNNTTNNNNNNNNNNNNNNNNNTN
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTNTTTTNTTCTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTTT
NTTTTTNNTTTTTNNNTTTTGTTTTTTNNTTTTTTTTTTNCCCTCCTCCC
CCTTTCNTTTTCCCCCTTTCCCTCTTTTTCTCCTTTCTCCTCTTTCCCCC
CTTTCTTTTTTCCCTCTCCCCTCCTCCCCTCCCGCCCCTTCTCCTN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACGCAACTGAGGAAGGCTGAGTAGGAAAA
GTTATCTTTCCGTAGAAGAACAGAACAATTATTTATCCAATACCAGATAG
ATGGTTAGCACTGAAAATACAAGAATTACAGTATTAAGACTAATTAGGTT
ATATTTAGAAATATATATGCACACACACACATTCACATGCATACATACAT
ACATACATACATACATACATAAGTCATACTATCATACTGTCATACTGTTA
TACATACATAATAAGAGTCTATGAAAAACCAGTTTATGAATTTGAAAGAG
AGCAAATAAGGGTGTTTGGAAGGTTCTAGGGAGGACAAGGACAGAAGAAA
TGGTCATACAATTATGATGTTAAAAAGGCTCATATCAAAGTTTATCAACT
ACAAATAGAGTTAAATTATTATAGTATCCAATGTCTTTATTTTAGATGGC
TTTTGAAGTATTTGTATATTTATTATAAGAGGCGAGTATGAAGCTTTACT
ATANCCCTATGACTGATTGCTAGGACTCTTTTCTGGATTATATGTAATAT
AGTACAGCTGTATTCTTTTGCTGGGCTTGTCTTTCACATTCCCGTTTTTT
TGTTTTGGAGCCCCTCTTTCGAATGTCCTCCCTTTCGTCTTATCGCCTTG
TTCTGTGATCCTCGTTTTTGTGTCCTCCCCCCTCGCTN

Query= MSMg01no439_g03.b1 MSMg01no439_g03.b1 CHROMAT_FILE:
MSMg01no439_g03.b1 PHD_FILE: MSMg01no439_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:29 2005
         (299 letters)



>mm_chr14_98471331_98472029
          Length = 699

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctttcataaaccaacagagttatcctcttttaaaccatctctccaaaaagaacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agtctttcataaaccaacagagttatcctcttttaaaccatctctccaaaaagaacaaaa 277

                                                                       
Query: 61  ataagcaataatttaagaaatagggcttcatctttcactttgaatctgtgatgttttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ataagcaataatttaagaaatagggcttcatctttcactttgaatctgtgatgttttcac 217

                                                                       
Query: 121 tgataaatgcaaaccatttctttctgttttattttctttcttttttttttgtaggagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tgataaatgcaaaccatttctttctgttttattttctttcttttttttttgtaggagaaa 157

                                                                       
Query: 181 aaaatagttaatcagatgaaaaagtcattaagtataagtgcatttggaaatggggaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aaaatagttaatcagatgaaaaagtcattaagtataagtgcatttggaaatggggaactg 97

                                                                      
Query: 241 tcagatacacaagtaaagcagccaggcgggtgggggctgggaagggggggatggtggag 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tcagatacacaagtaaagcagccaggcgggtgggggctgggaagggggggatggtggag 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_g03.g1 MSMg01no439_g03.g1 CHROMAT_FILE:
MSMg01no439_g03.g1 PHD_FILE: MSMg01no439_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:29 2005
         (472 letters)



>mm_chr14_98306260_98307131
          Length = 872

 Score =  897 bits (464), Expect = 0.0
 Identities = 470/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgcaactgaggaaggctgagtaggaaaagttatctttccgtagaagaacagaacaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgcaactgaggaaggctgagtaggaaaagttatctttccgtagaagaacagaacaatta 260

                                                                       
Query: 61  tttatccaataccagatagatggttagcactgaaaatacaagaattacagtattaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatccaataccagatagatggttagcactgaaaatacaagaattacagtattaagact 320

                                                                       
Query: 121 aattaggttatatttagaaatatatatgcacacacacacattcacatgcatacatacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaggttatatttagaaatatatatgcacacacacacattcacatgcatacatacata 380

                                                                       
Query: 181 catacatacatacatacataagtcatactatcatactgtcatactgttatacatacataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catacatacatacatacataagtcatactatcatactgtcatactgttatacatacataa 440

                                                                       
Query: 241 taagagtctatgaaaaaccagtttatgaatttgaaagagagcaaataagggtgtttggaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagagtcaatgaaaaaccagtttatgaatttgaaagagagcaaataagggtgtttggaa 500

                                                                       
Query: 301 ggttctagggaggacaaggacagaagaaatggtcatacaattatgatgttaaaaaggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttctagggaggacaaggacagaagaaatggtcatacaattatgatgttaaaaaggctc 560

                                                                       
Query: 361 atatcaaagtttatcaactacaaatagagttaaattattatagtatccaatgtctttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatcaaagtttatcaactacaaatagagttaaattattatagtatccaatgtctttatt 620

                                                               
Query: 421 ttagatggcttttgaagtatttgtatatttattataagaggcgagtatgaag 472
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ttagatggcttttgaagtatttgtatatttattataagaggtgagtatgaag 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)