BAC Information

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BAC

Clone NameMSMg01-439O23
Chromosome14 (Build37)
Map Location 22,658,749 - 22,659,093
singlet/doubletsinglet
Overlap geneVdac2
Upstream genePlau, EG620119, Vcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8
Downstream geneComtd1, Zfp503, 1700112E06Rik, EG665075, EG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439O23.T7 (MSMg01no439_o23.b1)MSMg01-439O23.TJ (MSMg01no439_o23.g1)
ACCAG530170AG530171
length778775
length of high quality
(start - end)		352 (47 - 398)429 (73 - 501)
definitionCHROMAT_FILE: MSMg01no439_o23.b1 PHD_FILE: MSMg01no439_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:11 2005CHROMAT_FILE: MSMg01no439_o23.g1 PHD_FILE: MSMg01no439_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCCTATCTTCATGAATCCCTGCATTCAACTCCCAAGCAGCACC
ACACACATACTTGTGCACACACACAAAAGTGAACAGCAAAATATAAATAA
GATTATATATATCTAGGCAGTGAGTTTCAGGTCAGGAAGGGCCACACAAG
AGACTTTAAAAAAAAACAAAAAGCTATGTTATCGGCCGGGCAGTGGTGGC
GCCCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGA
GTTCGAGGCCAGCTTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA
CACAGAGAAACCCTGGGGGGGGGGGGAGGGGGGNACATGTTATCTANNAN
NANAGAGGNGNNTTATAAANNNNNTAAAAAAAAAGAAAAAATAATTAAAA
AATTGAANTGAATANATGGGGGAGGNGAAATTANGAGATAANGTGAAAAA
AGGAGTGTTTAGTAATTAATATAAGTTTTTTTAAAAATTGGTAATAGTAT
TTGTGTTAATTTTGGTTTTTTTTTAATATTTTTTTTTTTTGTGTGAGGGA
TATGAAGTTTATTTGTAATTTTTATGGGATTTGAATTATTGTGGTATTAT
TTTTAGAGTTTATGTTAAAAAACGTAGTTTTTATTTTTTTTATTATTTTT
TTATTTTGTATTAAATATTATTGTTTGGGTTGTTATGTTTTTTTTGTATT
GGATATTTAGAGAGGAAAAAATAATATT

GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACAGTTGATCATCTACTCAGGAAAAGA
ATTCAGCACTCAGGAGGCAGAGGCAGAGGCAGGCAGGTCTCTGTGAGTTC
GAGGCCAGCCAGGACTATTACACAGAAAAACTGTCTTGAAAAACCAAAAC
AAAAAGGCTGAGTGTAGTTTGCATTGACATACCTTACCCTAGCAGACTGC
ACCTGTTGGCTTCAGCCATCACTTGACATAGCTAAAGCCATCCCAGGAAG
TCTTCATTGAGGGATTACTCATATCCGATTGGCCTATGGCTAGGTCTCTG
AGAGATTGTCTTAATTATCCATGTGGGAGGGCCCAGTGTGGGCAGGGCTG
CCCCTCTGCAGGCTTTCTAAGAAAGCTAAACTAACAGCCTGGCATGGTGG
CACATACCTTTAAGCCCAGCACTAGAGAGACAGGCAGGAGGATCTCTCTG
TGAGTTCAAAACCAGCCTGGTCTACATAGTGACCTCTATGGCAGCCAGGA
CTACTTTGGGAGACTACCTAGAAAAGGAAGGGTAGCTTAACCGGGGAATC
ACCAAACAGGAACTTCCGCCAGGGATTTTCCGCTTCTGGGCCCGGTCCCT
GAACTTACCTCCAATGGAAACCTCTTCTTAAATCCGGAAGGCCGAAAAAA
CCTCCCTCCCCCAACAAAGTTTTTTTGGTTTAAAGAGAGTTTTCTCCCCC
CCCCCCCCCAAAAAAGAAAACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_o23.b1 MSMg01no439_o23.b1 CHROMAT_FILE:
MSMg01no439_o23.b1 PHD_FILE: MSMg01no439_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:11 2005
         (352 letters)



>mm_chr14_22658707_22659457
          Length = 751

 Score =  600 bits (310), Expect = e-176
 Identities = 338/349 (96%), Gaps = 7/349 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcctatcttc--atgaatccctgcattcaactcccaagcagcaccacacacat 62
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaattctgcctatc--cagatgaatccctgcattcaactcccaagcagcaccacacacat 330

                                                                       
Query: 63  acttgtgcacacacacaaaagtgaacagcaaaatataaataagattatatatatctaggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acttgtgcacacacacaaaagtgaacagcaaaatataaataagattatatatatctaggc 270

                                                                       
Query: 123 agtgagtttcaggtcaggaagggccacacaagagactttaaaaaaaaacaaaaagctatg 182
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 269 agtgagtttcaggtcaggaagggccacacaagagacttt-aaaaaaaacaaaaagctatg 211

                                                                       
Query: 183 ttatcggccgggcagtggtggcgcccgcctttaatcccagcacttgggaggcagaggcag 242
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttatcggccaggcagtggtggcgcccgcctttaatcccagcacttgggaggcagaggcag 151

                                                                       
Query: 243 gcagatttctgagttcgaggccagcttggtctacagagtgagttccaggacagccagggc 302
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 150 gcagatttctgagttcgaggccagcttggtctacagagcgagttccaggacagccagggc 91

                                                            
Query: 303 tacacagagaaaccctggggggggggggaggggggn-acatgttatcta 350
           |||||||||||||||||||||||||||| |||| |  ||||||||||||
Sbjct: 90  tacacagagaaaccctgggggggggggg-ggggcgccacatgttatcta 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 751
Length adjustment: 9
Effective length of query: 343
Effective length of database: 742
Effective search space:   254506
Effective search space used:   254506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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