Query= MSMg01no440_h14.b1 MSMg01no440_h14.b1 CHROMAT_FILE:
MSMg01no440_h14.b1 PHD_FILE: MSMg01no440_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:56 2005
(488 letters)
>mm_chr14_23610693_23611578
Length = 886
Score = 901 bits (466), Expect = 0.0
Identities = 482/488 (98%), Gaps = 2/488 (0%)
Strand = Plus / Minus
Query: 1 caattccaccactctgctgatcttgcaggtacaacttaggccattgaaaagaccgtcatt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caattccgccactctgctgatcttgcaggtacaacttaggccattgaaaagaccgtca-- 629
Query: 61 tttttttttcctgtctgtacgcagtaaaagcttggaaatagaatttagtgaaattcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttttttttcctgtctgtacgcagtaaaagcttggaaatagaatttagtgaaattcatgt 569
Query: 121 tcagtttttgttacttttctccaaattacctgtttaaaaacaaacccagaaacttctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcagtttttgttacttttctccaaattacctgtttaaaaacaaacccagaaacttctgct 509
Query: 181 tcagccacataggtacagccacataggcacctttttagagaaagcacccaggggatatgt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 508 tcagccacataggcacagccacataggcacctttttagagaaagcacccagggaatatgt 449
Query: 241 ccaagcacaggcaaaaccagcatcccacctctactacgctaccatcttacctggcaaggt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 ccaagcacaggcaaaaccagcatcccacctctactatgctaccatcttacctggcaaggt 389
Query: 301 catcagtaagtaactcatttatttaatccctcagcatgccctccttattagatgtcaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catcagtaagtaactcatttatttaatccctcagcatgccctccttattagatgtcaatg 329
Query: 361 attgcctcatttctggaggaaatgtgttttacaagggaatttttattatgttgggcagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attgcctcatttctggaggaaatgtgttttacaagggaatttttattatgttgggcagag 269
Query: 421 accaaagcttcatctaatttgctttggcttggagtcccatcatgtgttctgaatgactag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 accaaagcttcatctaatttgctttggcttggagtcccatcatgtgttctgaatgactag 209
Query: 481 ttcaggat 488
||||||||
Sbjct: 208 ttcaggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 886
Length adjustment: 10
Effective length of query: 478
Effective length of database: 876
Effective search space: 418728
Effective search space used: 418728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_h14.g1 MSMg01no440_h14.g1 CHROMAT_FILE:
MSMg01no440_h14.g1 PHD_FILE: MSMg01no440_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:56 2005
(543 letters)
>mm_chr14_23427185_23428126
Length = 942
Score = 988 bits (511), Expect = 0.0
Identities = 535/543 (98%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 1 tcacagtgctagaattccaagcttggtgtagtagcatggcttggttcaggagctgactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacagtgctagaattccaagcttggtgtagtagcatggcttggttcaggagctgactct 260
Query: 61 cttactcctaaggtctaggtatggagaaaaccaaaaggatatcttttctgttcttataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttactcctaaggtctaggtatggagaaaaccaaaaggatatcttttctgttcttataga 320
Query: 121 ccacatgaccacggcctcatttaaccttaatgatctcctggggggctaggttggatttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacatgaccacggcctcatttaaccttaatgatctcctggggggctaggttggatttta 380
Query: 181 agatttcaacaaataaatttgaataggacacattgcagccccaaatggagagagcccagt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 agatttcaacaaataaatttgaataggacacattgcagctccaaatggagagagcccagt 440
Query: 241 ctcttctcctcaccctgcctcactgagttttctaagatttgtgctttaggcaataatttg 300
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ctcttctcc-caccctgcctcactgagttttctaagatttatgctttaggcaataatttg 499
Query: 301 aaaggctttaactaagcatgtattcgctgaatatgaaaggagaaaagaagaccatacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaggctttaactaagcatgtattcgctgaatatgaaaggagaaaagaagaccatacatt 559
Query: 361 cttcccagggaggtctcagctcctgaatttgggagtcttgtaacacagagcaaagccatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcccagggaggtctcagctcctgaatttgggagtcttgtaacacagagcaaagccatt 619
Query: 421 tattccacaggaattgtggagacagggatccaagcccaaggaagcattcaagggttagtg 480
||||||||||||||||| |||| ||||||||| ||||||| |||||||||||| ||||||
Sbjct: 620 tattccacaggaattgtagagagagggatccaggcccaagaaagcattcaaggtttagtg 679
Query: 481 tagaacagacaaaggaagagggtccagggtcacagatacacttgagaggacaacaggaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagaacagacaaaggaagagggtccagggtcacagatacacttgagaggacaacaggaca 739
Query: 541 cag 543
|||
Sbjct: 740 cag 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
