BAC Information

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BAC

Clone NameMSMg01-440P15
Chromosome14 (Build37)
Map Location 8,996,101 - 8,996,375
singlet/doubletsinglet
Overlap genePxk
Upstream geneLOC100041791, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14
Downstream genePdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440P15.T7 (MSMg01no440_p15.b1)MSMg01-440P15.TJ (MSMg01no440_p15.g1)
ACCAG530966AG530967
length774734
length of high quality
(start - end)
279 (52 - 330)421 (85 - 505)
definitionCHROMAT_FILE: MSMg01no440_p15.b1 PHD_FILE: MSMg01no440_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:36 2005CHROMAT_FILE: MSMg01no440_p15.g1 PHD_FILE: MSMg01no440_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAACCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGA
TCCGCGGAATTCTCTGGGTTTGCAATGTTCTCGGGGTTCTTCAAACACTA
ATAAATAAATACATAAATAAAAATAATAATAACTGGAAGCAACAAAGGTG
GTGGCAAAGGGTGGGGGATTTAATGGTTATTTCCTTTAAATGAGTCATGT
GAGAATTGAATCAAGTATGTGAAACCACACAGGGACATCTCTCCCTAGAA
TAGCTCTGACTCCATTTCCAGCTGTATGGCTTAGGTTGCGGTTGGCTCTG
CCTACTGAGCTCACAGGTGGAACATATGCATTTTTTAATTAGGCCAAGGG
GACAAACAATCCCTGTTTCCTCACATACTATTTGAAGGAAGTGATGGGCT
CAAAGCCCCAGGCATCCTCATACCCTGCCTACCCAGCTTGGTCTTACAGG
CACGTGCTACTGCTCAGGTCCTCACGCTCGCACGGCGAGCATTTCATAGA
GAAGCAGTCTCTCAGCGCCACACAACTGCATCTTCCCTTTGAAAAGCAGG
ACTTGCATAAGCGAGAAAGAGATTTGAAGTTTGACTATAAGGAGGGAAAC
CCCTGATATGGGGAAGTATCCAAATACTGATTATCCTCTCGTGGACCTGT
CCCCAAAAAAAAACAGCCCCTCTACTTCTTTCCTCCCCCCCGGTAAACAA
AAAATAGGTTCTTCTTTTTTCCGCTTAGCCTGGTTCTGAAACTTCATCTT
CGTTAAACTACATCTTCTTTTTAG
TTTCTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAGATCCATACTT
ATCACCTTGTACAAAACTCAACTCCAAATGAATCAAAGACTTCAACCTAA
GACCAGGTACAATGAATCTGACAGAAGAGAAAATAGGAGTAGTCTTGAAC
TCACTGGCACAGGAAAAGTCTTTCTAAATAGAACACCAATAGCACAGGCA
TTAAGACCAATAATTAAGAAATTAATGAATGGGACTTCATTCATGAAAAT
AAAAAGATTCCAGAATATATAAGGAACTCAAAACATGGACATCAAGAAAA
CATATAACCAAATTTAAAAGTGGGATACAGATTTAAAAAAAGAAAAAAAC
AACTTAAAACATGAAACAAAAATGGCTGGAAAAAAAAAACACTTAAAGAA
ATATTCAACATCCTTAGCCGTGAGGAAGATATCAATCCAAGTACTTTGAG
ATCCATCTTACAGCAGTCAGAGTGGCTAAAACTACAATGCAAGTGACAGC
TCGTGCTGGCGAGGGTGTGCTGTTAAGAGAAGCACTCATCCATTGTTGGT
GGGAGTGCAAACTTGTTCAGCCACTATGGAAATCAATGTGTCTGGCTCCG
CAGAATGATAGGAATCAATCTATCTGATAATGCGTCTATAACCCCTGGGA
TTATACCCGAAGGAATGCTTTATCCCTACCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_p15.b1 MSMg01no440_p15.b1 CHROMAT_FILE:
MSMg01no440_p15.b1 PHD_FILE: MSMg01no440_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:36 2005
         (279 letters)



>mm_chr14_8995820_8996498
          Length = 679

 Score =  451 bits (233), Expect = e-131
 Identities = 265/281 (94%), Gaps = 13/281 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctgggtttg-c--aatgttctcggggttcttcaaacac----taataaataaa 58
           ||||||||||||   | |  ||||||||| |||||||||||||||    ||| |||||||
Sbjct: 556 gaattctctggg---gacgaaatgttctcagggttcttcaaacactgattaaaaaataaa 500

                                                                       
Query: 59  tacataaataaaaataataataactggaagcaacaaaggtggtggcaaagggtgggggat 118
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tacataaataaa---aataataactggaagcaacaaaggtggtggcaaagggtgggggat 443

                                                                       
Query: 119 ttaatggttatttcctttaaatgagtcatgtgagaattgaatcaagtatgtgaaaccaca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttaatggttatttcctttaaatgagtcatgtgagaattgaatcaagtatgtgaaaccaca 383

                                                                       
Query: 179 cagggacatctctccctagaatagctctgactccatttccagctgtatggcttaggttgc 238
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagggacatctctccctagagtagctctgactccatttccagctgtatggcttaggttgc 323

                                                    
Query: 239 ggttggctctgcctactgagctcacaggtggaacatatgca 279
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggttggctctgcctactgagctcacaggtggaacatatgca 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)