BAC Information

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BAC

Clone NameMSMg01-441J24
Chromosome14 (Build37)
Map Location 56,875,970 - 56,876,450
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102
Downstream geneGzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441J24.T7 (MSMg01no441_j24.b1)MSMg01-441J24.TJ (MSMg01no441_j24.g1)
ACCAG531463AG531464
length813785
length of high quality
(start - end)		479 (71 - 549)249 (69 - 317)
definitionCHROMAT_FILE: MSMg01no441_j24.b1 PHD_FILE: MSMg01no441_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:28 2005CHROMAT_FILE: MSMg01no441_j24.g1 PHD_FILE: MSMg01no441_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATAAAACTTTCCGTTTATCTAAACAACATTAATTCATGAAAGTTCA
TCTTTATGTTGATCTTCAAGAAATCTGATCAATAGGGTGGGCTAGTGCCC
AGGGTTTATTGTAGTAATTTAATAATGACAGGAAAAGCATATCAGCTGCA
AGAAACAATCCTGAGATGAGATCTCTTTGGAACCTTGCCATTGAGCTCAC
ACATCACAGACCATGCAAAAATAGTGGGCCACCTCCAGGAGGGCCACCTG
CTAGCCTTACCCTCCCCTAATTGCCTCCTAACAGTGCATGATGTGAAATT
CACAAAGATCCCAATAAAAAGTTTCTTTTTTTTTTTTTAATTTTCCCCTA
AATACCTTAACTTAACTTCTATCCCTAGTCTTGTCAGTCCCAACAGGTTT
CAAATCGATTACAAGATACTTCAGCAACCCCCAAATGCTCCCTCAGAATC
TGCATTCCAGACAACTCCAAAGCAGCTAGCCCCATATAGTCCCACAAAGC
CTGGAATCAAAAGTCACAGTCTATACTCCCAGCCTTGACCAACATTTCAG
CTTTCTTTGGGTCTCTATCAACACTCCCAATATTTATAAGGGAGCAACCC
CGAAAGCAATGAACTTTTACCTGGAGGCCCACAACCCCAAAAATAAAAAA
AAAGGCGGGAAATTAATGGGTTCTCTCACCAGCCCACAAAAAGGGGGCTA
AAAGTTTTTTCCCCAACCCAACCCAAAAAATTTTCCCTTAATTAAATGGG
TGGAATAATATTT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATATGTGGTGCCCAGCTTTTTAACATGGTGGT
GAGATCTGAATTCTGGTATTGCATGGTGAGCCTGCGCAACAGCACGTCAC
TGACTGAGCTATCTCCTCAGCCCTACTTCCTATTTTTCTGCCCTGTCCTC
ATATTCAGATACTTTTAGTCTATCAAATTTATAATTAAAAAATTTTAATG
CAAGAAAATGAGTCCAAAAAGGTTACATACATTTTAGTTAACTTATAACA
GATCTTATTTTTTCATGATATTAGTGGCCAATTTACACATTAGAGAAAGG
CAACTGAATTTAGAACAATATATGTTTATCTGCCTCTTTCAACAGAAAGT
ATGTACTTGACATTAAGGAAAATTAATCTAAGTTGTGTGGTGGATCCATG
TGTGTAAACAGCCTTGTATTATAAACACCTTCCATAAATCTCCCCAGATG
TTACTGAATGTTTAGCCAGCTCCCTCTCACTACTCTTTCCTTATATAACA
CCACACTTTTCTGTTTATCTACATCCTTTCTCTCCCTGCACTATCTAAAT
GTTATTTAGATTTCAGGNCACTTTTTTATTGTTTTAGATTTAAATATTTT
CTGAAGAACTACCCTTGATCCTTTTCAACACTTTCTCCACTGGGNAAAAT
TGCCTTTTAAAAAAACAAAAGGCCCCTTATAGAAATTACCCTCCAAAAGG
TTTAACTCCAAAAAGCCCTTTAAAACTCCCCCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_j24.b1 MSMg01no441_j24.b1 CHROMAT_FILE:
MSMg01no441_j24.b1 PHD_FILE: MSMg01no441_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:28 2005
         (479 letters)



>mm_chr14_56875772_56876650
          Length = 879

 Score =  903 bits (467), Expect = 0.0
 Identities = 477/481 (99%), Gaps = 2/481 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctaaacaacattaattcatgaaagttcatctttatgttgatcttcaagaaatctgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atctaaacaacattaattcatgaaagttcatctttatgttgatcttcaagaaatctgatc 258

                                                                       
Query: 61  aatagggtgggctagtgcccagggtttattgtagtaatttaataatgacaggaaaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatagggtgggctagtgcccagggtttattgtagtaatttaataatgacaggaaaagcat 318

                                                                       
Query: 121 atcagctgcaagaaacaatcctgagatgagatctctttggaaccttgccattgagctcac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 atcagctgcaagaaacaatcctgagatgagatctctttggaaccttgccattgaactcac 378

                                                                       
Query: 181 acatcacagaccatgcaaaaatagtgggccacctccaggagggccacctgctagccttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acatcacagaccatgcaaaaatagtgggccacctccaggagggccacctgctagccttac 438

                                                                       
Query: 241 cctcccctaattgcctcctaacagtgcatgatgtgaaattcacaaagatcccaataaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctcccctaattgcctcctaacagtgcatgatgtgaaattcacaaagatcccaataaaaa 498

                                                                       
Query: 301 gtttcttttttttttttt--aattttcccctaaataccttaacttaacttctatccctag 358
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtttctttttttttttttttaattttcccctaaataccttaacttaacttctatccctag 558

                                                                       
Query: 359 tcttgtcagtcccaacaggtttcaaatcgattacaagatacttcagcaacccccaaatgc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcttgtcagtcccaacaggtttcaaatcgattacaagatacttcagcaacccccaaatgc 618

                                                                       
Query: 419 tccctcagaatctgcattccagacaactccaaagcagctagccccatatagtcccacaaa 478
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 619 tccctcagaatctgcattccagacaactccaaagcagctagccccgtatagtcccacaaa 678

            
Query: 479 g 479
           |
Sbjct: 679 g 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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