BAC Information

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BAC

Clone NameMSMg01-443G02
Chromosome14 (Build37)
Map Location 82,910,190 - 82,910,511
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443G02.T7 (MSMg01no443_g02.b1)MSMg01-443G02.TJ (MSMg01no443_g02.g1)
ACCAG532800AG532801
length748697
length of high quality
(start - end)
165 (79 - 243)445 (87 - 531)
definitionCHROMAT_FILE: MSMg01no443_g02.b1 PHD_FILE: MSMg01no443_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:58 2005CHROMAT_FILE: MSMg01no443_g02.g1 PHD_FILE: MSMg01no443_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTGGTTTCCTCTGACCAACAACCTAAAAAGTAGTTTCT
CATAGTTGCCACTGAGGTGATTTTATTTGGTGGTCTATGCCTTTCATGAG
AAGCAGTGTTACATGTGATATGATATATATATATAATTTGTGTGTGTATG
TATATATGTATATATATATATATATATATATATATATATACACACACACT
CTATTTTTTTTTATATACTTCTGTGTGTGTGTGTTTTTTTTTTGTGTGAC
ACATATATATAAAAAAACACTTTCGTGATTTTTGAGCGAATGACCCACTT
TCTCCGTGTGGGTTTTTTTTTCCCCCCCCCTGTGCGCGTGCTTTTTATAT
ATAGAGAGATTTTTTTGCGCGCTCTTTTTTTTTTTTGATATACATACTTT
CCCTGTTTTTCCTTTTTTTTTCCTCCCTTTTTTTTTTTTCCTATTCCCTT
TTCTTTCCTTCCCCACCTTTTTTTCCCCATTTATCTCTTTCTTTCTCTTC
TTCTCCTTCCTTTTCTTCCTCTTTTTGTTCCCTCCCTCCTTTATTTATTT
ACCCTATTTTTCCTCTTCTTCTTATCATTATTCCCCCCCCTCTCCCCCCT
ACAATTCTTTTTCTTTTTTTCTTTCCGCTCTTTCCTCCCCCCCTTTACTT
ACCCTTTTCCTTCTTTCCCACTCTTTATCTCCCTTCTTCTTTATTCCG
TTTCCACCCCCCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTCATATCCT
GAATTATCTTCCTTATTTCATTTGGCCATTTATTTGTGTATTCATAGATG
ACAAGCAGAGGAGTTTATTCTGGAACTTTAAAGTTTATTCAGATATTTGG
TCCTCTTGTAGGAATGTTCTTTTGAATGCTGTGTCATGCATTTAATATAC
ATTTTCTCACCAGGCTCCATTACTATGAGACTGGTAATTTTTGAAGTAGA
AATATATTGTCTCATTGTTTTGTACTGCTTGTGGTAATTTTCATAGGATC
CAGGCTTCTGAAAATAGGTTGTTGGTTGTGCCTTTTAATATAAGACTTAG
CACACTGGGTTACAGCTCAAAGGTGGTGCAATGATCTAAAAGGTCTGAAG
GAATCCCTTATAGGCAAGCATAAGAGGAACACAGCTCTCTTCAGGCTATA
CTTTCTCTACCTGTGTGAACAGCTGGCTTCTGCTGAGAAAGATTGATAGT
TTTATCAAAAGCTAAAGAAAATATTGTCCATATTAAGATAACCAATTTTT
GTCCATACGCTTCAGAAATGCTGAATTTAAAATAGTCCTAATAACACTTA
CTCCAATAATTTTAAATGTAGATAACCTATTTTACCGGAAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_g02.g1 MSMg01no443_g02.g1 CHROMAT_FILE:
MSMg01no443_g02.g1 PHD_FILE: MSMg01no443_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:58 2005
         (445 letters)



>mm_chr14_82909667_82910511
          Length = 845

 Score =  623 bits (322), Expect = 0.0
 Identities = 322/322 (100%)
 Strand = Plus / Minus

                                                                       
Query: 124 aggaatgttcttttgaatgctgtgtcatgcatttaatatacattttctcaccaggctcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aggaatgttcttttgaatgctgtgtcatgcatttaatatacattttctcaccaggctcca 786

                                                                       
Query: 184 ttactatgagactggtaatttttgaagtagaaatatattgtctcattgttttgtactgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttactatgagactggtaatttttgaagtagaaatatattgtctcattgttttgtactgct 726

                                                                       
Query: 244 tgtggtaattttcataggatccaggcttctgaaaataggttgttggttgtgccttttaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgtggtaattttcataggatccaggcttctgaaaataggttgttggttgtgccttttaat 666

                                                                       
Query: 304 ataagacttagcacactgggttacagctcaaaggtggtgcaatgatctaaaaggtctgaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ataagacttagcacactgggttacagctcaaaggtggtgcaatgatctaaaaggtctgaa 606

                                                                       
Query: 364 ggaatcccttataggcaagcataagaggaacacagctctcttcaggctatactttctcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaatcccttataggcaagcataagaggaacacagctctcttcaggctatactttctcta 546

                                 
Query: 424 cctgtgtgaacagctggcttct 445
           ||||||||||||||||||||||
Sbjct: 545 cctgtgtgaacagctggcttct 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)