BAC Information

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BAC

Clone NameMSMg01-443H10
Chromosome14 (Build37)
Map Location 78,549,411 - 78,549,594
singlet/doubletsinglet
Overlap genenone
Upstream geneD230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H10.T7 (MSMg01no443_h10.b1)MSMg01-443H10.TJ (MSMg01no443_h10.g1)
ACCAG532864AG532865
length730758
length of high quality
(start - end)
82 (77 - 158)187 (84 - 270)
definitionCHROMAT_FILE: MSMg01no443_h10.b1 PHD_FILE: MSMg01no443_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:04 2005CHROMAT_FILE: MSMg01no443_h10.g1 PHD_FILE: MSMg01no443_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAATCCAACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACACAGCG
CGGAATTCTCATTGTTCCCAACAGCAACTCGCAATTTCCTGCATCACCTG
TTCACCCCTCACTGGCTTCCTTGCCCACCTGTACTTGTGTGAGCATGCAT
GCACTGGCTTAGAGTAAGAAGGCAGAACCACACTTTCTGTTTATTTAGGC
CTCTGAGGCTGTATGTTACAGTAGCTTGTAGGTGGCTTCAGAGTTAGTGT
TTTGATATAGTTAGACCCCAGTGCTTGGGTATGAAAACTTGGAGGAAAAA
CTCACTAAAGATATTTTTACCTACCTTTACCTTTGGATCGAGGAAAAACT
CACGATAGATGCTGTAAGTCATTTTTAATAGATTGAGTACTCTTCATTTT
CTAGATCATATTATACCTACAATGTTTTCCCCTTCCCTTTCCTCCCTCCA
GACTCTCCCCCATATGCCTTGTTCTCTTTCAAACCCATGCTCTCTTTTTC
CCTGTTATTATACCAATATATTTATATATGTGCATTTGTGCCCTATTTCC
CCAGGCAGATCCTCTTCTACCGATTCTCACTTTTTTGACCCAGTGCTTTT
ATTTAATCTTAAATCCCCTGCCCCCCCCCATTCTCCCCTCCCAACCCATC
TCTTTTTTTTTGTTTCACGCCCACTTGTTGTGTCCCCCTCCCTATGCGCT
TTTTCCTTTATCTCTCTTCCAACCCCCCCC
TTCTCGAAGCTATGTCTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTTCATACTTCCCTTGGAATC
CTAAGCCTAGGTTTTCTTCAAGGGTCATATGTCAGGGAATGTGTTTTTAT
GTTTCTTATAAAGGTAAAGTACTGAAAGTCAGAAAGTCTGCTTTCATCCT
GTGTATGGCGTTATACTACCCACAATGTAAGCAGACTGTGGTCTGGGGAC
CTTTTAGATAAACACTATGTGTTTGGGGATGCTACATCAGTAAGAAAGGG
TTCCGCCAGAAACCTTACTTTGTGTTCCACGAAGATTGTTCCACCCTATG
TGATAAACTTTACATCTCTTGCTCTGTGGATTAGTCAGGTACTGTCTGAA
TGTGACAGCCGCTTTCTTATCACCTTGACTTCTTGTATTCCTGACCACCC
CAAATGTTATTTCCGTTACGCCGTGATTGTCTTACTCTCTGGTCCTATGG
ATTTGTGCTCTACCCCCCTTTTTGCTTCCGTCTGACTTTCCAACCAACCC
CCGTCCCCCTTTAATTTTACTCCTCCCCCTTCTTTTTTATTCTTTTCCCC
CCTTCCCCCCGCCCACCTTTCAATCTCTCCCCCTTATTATTTATTCCCCA
CACTATTTTTTACTTATTTTCCCTTTTTCTCCCCAACCTTTTCACGCGCA
CTCTTTTTCTACTTTTATATTTCGCCCCCCTTTATATCCGCCATCTTTAA
ATATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h10.g1 MSMg01no443_h10.g1 CHROMAT_FILE:
MSMg01no443_h10.g1 PHD_FILE: MSMg01no443_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:04 2005
         (187 letters)



>mm_chr14_78549211_78549797
          Length = 587

 Score =  302 bits (156), Expect = 1e-86
 Identities = 177/184 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacttcccttggaatcctaagcctaggttttcttcaagggtcatatgtcagggaatgtg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 atacttcccttggaatccaaagcctaggttttcttcaagggtcatatgtcaggcaatgtg 325

                                                                       
Query: 61  tttttatgtttcttataaaggtaaagtactgaaagtcagaaagtctgctttcatcctgtg 120
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 324 tttttatgtttcttataaaggcaaagtactgaaagtcagaaagtctgctttcatcctggg 265

                                                                       
Query: 121 tatggcgttatactacccacaatgtaagcagactgtggtctggggaccttttagataaac 180
           ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatggggctatactacccagaatgtaagcagactgtggtctggggaccttttagataaac 205

               
Query: 181 acta 184
           ||||
Sbjct: 204 acta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)