BAC Information

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BAC

Clone NameMSMg01-443K06
Chromosome14 (Build37)
Map Location 104,542,646 - 104,542,890
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K06.T7 (MSMg01no443_k06.b1)MSMg01-443K06.TJ (MSMg01no443_k06.g1)
ACCAG532999AG533000
length729730
length of high quality
(start - end)
61 (257 - 317)245 (83 - 327)
definitionCHROMAT_FILE: MSMg01no443_k06.b1 PHD_FILE: MSMg01no443_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:18 2005CHROMAT_FILE: MSMg01no443_k06.g1 PHD_FILE: MSMg01no443_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATTAGTCTCATGTCAGNAAANGANNNANACAGATTCGGACCCCGCGG
AANNCNNAGGCATTTAACGNCACCCGCGGAGANCCNGGCANNCNNNNCNN
CGGAANCGCCAAAACACTTTTCCCCCAGAAGCAGGAGGAGNGGNNCACNG
GNANGGGAACGANNCATCNCCACGGGGCGCGGAANNNCCANCNCGCCAAA
CCCCCAAAGNNCAGCCCGGAGGCNNCCGGCCCAGGGGAGCANCNCCGCGA
TTTTTCTTGTGCTAACACCCCCTTTATCTGAGTCATATTTGCCCTTCTTA
ACAATCATTGGCTCCCTATTTTTTTTTTTATNACCNGACCANAGAGCACC
AAAAGCGGNCCAGTCTTACCCACCCCCCCACNATCAGATTTTCTTTTAGA
GTCCCAAACGTGATGATCCGCCATATTTTGTATTTTAAGAATACTGACCT
GCACCGTATTACGTGTCTATCACCGACTTTAATTTTAAATCTAAATACTA
CAGTTATGTCAGCTAATATTCTTACAAGTATATATCTTTGGTTAAATGCT
ACGAATTTTTTCTGGTGTTGTATATCCAACCCGCTATGCTCTTCCCCGTT
TTCACAGTAGATCTTATCCTTTTCAGCACTCCTTATCCGACCAAAATTCC
CCTGTTTTATTTACATATTTCCTGCGAATCTTTCTACATTTTTTTCCTGG
CCCCGCTTTGTTGGCCTCCTGTCTCTGGN
TTTAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAATCAAATACTTACGAAGCAAAAT
GATACTATCAACATTGTTCATAATATTTTCGGAGGACTCAAAGCTTCATA
AAACCTTCAGGTCACCAAGGACACAATCCCAATGTATGCAGCATATGAAG
ACCTGTGAAAACCTCAAATCAAAGGGAATAACAACATTTATCAATGCTAA
GATGGCATGATATCAAAATTTTTTGACAAGAACTTTAAACTTTCTATGAT
AAAGCAATTACTGCAAGCCGTCGTGAATATTTCTTGAAACCAACAAACTA
CAAAAAGTTATAGAAAATATAAAGGAGCAAATGTATCAAGAAGTATTATA
GCCAAAAATTCATATTCTATTAATATATCCCAATATACAGAGATTATATG
AATAATAACAGGTCCACATTTATGACCACAGCTTTAGGCAGTACCATGGG
CAATGCATGCAAAATATAGCTAGACACACAATAATACAAATGAGAACAAT
AGAGGATATAATTTTGAATCACGATATCTGTATGCCGAAGTTGTTCCCAT
GACACATAATTATTTACGTTGCATTATGCCTCCCATTTAGTATGATGAAG
CCCGAGCCTTTAAAACTCGCTAGAAATTGCCTTCTAATCTATCATTTGCC
CATGCCACTTTTATTATTTACCATGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k06.g1 MSMg01no443_k06.g1 CHROMAT_FILE:
MSMg01no443_k06.g1 PHD_FILE: MSMg01no443_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:18 2005
         (245 letters)



>mm_chr14_104542446_104543090
          Length = 645

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacttacgaagcaaaatgatactatcaacattgttcataat-attttcggaggactcaa 59
           ||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||| ||||
Sbjct: 201 atacttacgaagcaaaacgatactatcaacattgtccataataatttt-ggaggattcaa 259

                                                                       
Query: 60  agcttcataaaaccttcaggtcaccaaggacacaatcccaatgtatgcagcatatgaaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcttcataaaaccttcaggtcaccaaggacacaatcccaatgtatgcagcatatgaaga 319

                                                                       
Query: 120 cctgtgaaaacctcaaatcaaagggaataacaacatttatcaatgctaagatggcatgat 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 gctgtgaaaacctcaaatcaaagggaataacaacatttatcaatgctaagatggcataat 379

                                                                       
Query: 180 atcaaaattttttgacaagaactttaaactttctatgataaagcaattactgcaagccgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcaaaattttttgacaagaactttaaactttctatgataaagcaattactgcaagccgt 439

                 
Query: 240 cgtgaa 245
           ||||||
Sbjct: 440 cgtgaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)