BAC Information

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BAC

Clone NameMSMg01-443M14
Chromosome14 (Build37)
Map Location 92,626,229 - 92,626,593
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443M14.T7 (MSMg01no443_m14.b1)MSMg01-443M14.TJ (MSMg01no443_m14.g1)
ACCAG533109AG533110
length7201,075
length of high quality
(start - end)
385 (53 - 437)---
definitionCHROMAT_FILE: MSMg01no443_m14.b1 PHD_FILE: MSMg01no443_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:29 2005CHROMAT_FILE: MSMg01no443_m14.g1 PHD_FILE: MSMg01no443_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTAATTTACATGCCTTGAAGCACCTTCTTGCTAAAGA
CAGGACACCTAGGAAATGTGTTCCAAGTTCAGCCAAACAAAAACAGAAAG
ACTGCAATAACTATAGTAAAAGAGCCTCTTGTGGCAGCAGAAACTTGTGT
CATATGGGCCAAATTCACACATTTGGAGTCAATACGCTGCTGAACCTCAT
TAAGTTTGGATAATTTGGCTAGAAAAGTGAGGAGGAAAGAGTAGCATTGC
TATTTTAAGTTTGATAATTGGATGATACTATTTTCTTAAAGATTGAGGTA
CGTTACATTTTTAAAAACTGAGAGGTAAATAAGGTTACAAACAATTGATG
GTGAAATAAACTTTGTTTTTTGTTTTTTTTGTTTTTGTTTTTTGCTTGTT
TGTTTGTTTGTTTTCCAGCCGTAGCATGTTTAGCTTATGGAGACATTAAG
TAAACACTTAATGCTCTGAGTCTATAATAGTTAGCTTTGGAGCCTTCTAG
CTATTAAAGTAAGCTCTTAATCAAAAATATTATCCCAACTAAAATGTTTT
AAACACTTTTGATTATTTCAAATGAAAAATAAAAAAGTGCTAATTTCTCT
GTATCAAATAACAACCACCCTGTATTCCAATGAAACTTTATAGCCCAAAA
TTCTACAATTTCTTTATAAC
ATTAAATTCCCCACCCTTATTAACTGCGAATATTGATGTGGAGGATCTTT
TCTTCCCCATAGTCTGGGTGTATTGTCCCCCCCCATACGGAGGGAAAGGA
GGCGATATGGGTTGCGCGCGGGGAGCCATGGGATATGATTGCATACGGCG
CTTGCATACACCCCCTTACTCATATGTTTACCCCTATAACCTTTCAAAAT
TATAAGTGTTTGTACGAATGCGCCCAACACATATATGGTGAAAGAGGTCA
AGTATGAGGACGAAAAAGCGGGTAAGTGGCGCATTAGTACAAATGTGCCT
AAGTTTGATCGGGGCACAGAGCAATTGCGCACTATAAGAGATATAGCGGA
ACAATAATGGCGTACGATCCTCGCACCCATTTTTTTAAGACACAGCGGCA
TGGGCGGAGGTGTTAGAGAAGTGAACCCAACCACCGTGCAGTGAGTGAAA
TAAAGATGTAAATATTTAACAGGGCAGAGGAAGTCGCGCCGAGACAACAA
TAGTTATTGACTCATGAGGCAAATATGTATACTGCACACAGTGGTGCGCT
GTAAATCACTCAAGGAAGTGTGCGAATGGGCGTACCGAAGCAAAGGTATT
TATTTAATGGCGCTTTATTTTAACTAGGGGATCCCCACCGGCGGTTTTTT
GCGCTACTTTTGTTATTCTGGNTACGGTTATTATTCCGGGCTGTTTTGAC
CGCATATTCCCGTAATTAGTTATTGTTCCGTCCACTCTGAAGAGTCTGCG
GGTTCTTAAAGACATACTAAGGATCCACAGGCAAAATGGAGGTGCCGCGA
ATACAGGCGTAGGGCGAACCGGTCGGGTATTTGTGTTTGAATTCGGCGGG
TATAGAGAGAAAGGTATCACAAAAGCGTTAGTTGTGGATCAAAGGCCGAG
GGAAAAGAAAGAAGAATTTATGAATATTCTGCGGCCGCCCCGTTTATGTG
CAAATATTAGGGGAAAGCGAGGGCGCAAAAATTGAACAGCATCAAGTGTA
AAGCTTGCACTGTAATGAAATGATTGATATATCGCGGAAAAGCCCCGATA
TAGTTTGAGTGCGCGATTTAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_m14.b1 MSMg01no443_m14.b1 CHROMAT_FILE:
MSMg01no443_m14.b1 PHD_FILE: MSMg01no443_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:29 2005
         (385 letters)



>mm_chr14_92625884_92626668
          Length = 785

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  atgccttgaagcaccttcttgctaaagacaggacacctaggaaatgtgttccaagttcag 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atgccttgaagcaccttcttgctaaagacaggacacctaggaaatgtgttccaagttcag 651

                                                                       
Query: 81  ccaaacaaaaacagaaagactgcaataactatagtaaaagagcctcttgtggcagcagaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccaaacaaaaacagaaagactgcaataactatagtaaaagagcctcttgtggcagcagaa 591

                                                                       
Query: 141 acttgtgtcatatgggccaaattcacacatttggagtcaatacgctgctgaacctcatta 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acttgtgtcatatgggccaaattcacacatttggagtcaatacgctgctgaacctcatta 531

                                                                       
Query: 201 agtttggataatttggctagaaaagtgaggaggaaagagtagcattgctattttaagttt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agtttggataatttggctagaaaagtgaggaggaaagagtagcattgctattttaagttt 471

                                                                       
Query: 261 gataattggatgatactattttcttaaagattgaggtacgttacatttttaaaaactgag 320
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gataattggatgatacaattttcttaaagattgaggtacgttacatttttaaaaactgag 411

                                                                       
Query: 321 aggtaaataaggttacaaacaattgatggtgaaataaactttgttttttgttttttttgt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggtaaataaggttacaaacaattgatggtgaaataaactttgttttttgttttttttgt 351

                
Query: 381 ttttg 385
           |||||
Sbjct: 350 ttttg 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)