BAC Information

Click to search

BAC

Clone NameMSMg01-445D16
Chromosome14 (Build37)
Map Location 29,148,929 - 29,149,311
singlet/doubletsinglet
Overlap geneErc2
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D16.T7 (MSMg01no445_d16.b1)MSMg01-445D16.TJ (MSMg01no445_d16.g1)
ACCAG534209AG534210
length796744
length of high quality
(start - end)
44 (67 - 110)382 (69 - 450)
definitionCHROMAT_FILE: MSMg01no445_d16.b1 PHD_FILE: MSMg01no445_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:21 2005CHROMAT_FILE: MSMg01no445_d16.g1 PHD_FILE: MSMg01no445_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGACGATCCGCGGAATTCAG
CAGATTTCAAGCCACCAGCATAATAAGGAATATAAAGGAGGAAAGGGGAT
GAAAGGGAGGAGGAAGATGAGAAGGAGGAAGAGGCTCTTTCCTTCCCCCC
CTTTCTTTCTTCCTCCGCCCCTCCCCCCTCTTTCCCCTTTTCTTTCCCCT
CCCCGTTCTTTCTCTCTTCTCCTTTTCCCTGCCGCCGTCCTTTTTTTTTT
CTCCCTCCCCTTTCCCCCCTCCCTCCCTTCCTCTCTCTCCTCCCGCCGGG
TTCTGCCCCACTTTTCCCTCCGTTCCCCCCGGCAGCCGCGCCCCCCCTCC
CCCCACCCCTTTTTTTTTCTCCCCCCCCCCCCCTGCCCCTCTTTTGTTTT
TTTCCTTTCCCTCTCCTCCTTTCTTCCTCTTCTTTTTCTTTTTTTCTTTC
CTTTCTCCCTTTCTTTCTTCCCCCTTCCCCTCTCTCCCTTCTTTCTCCTC
CTCCCCTTCTTTCTCTTTCCTTCCCCCTCTTTCCTCTTTTCCTCTCTTTC
TCTTCTCCCCCCCCCCTTCTCTTTTCTTTTCCCTCCTCTCTTCTTTTTCC
TCTCCTCTCTTCCTCCCCCCCCCTCTTTCTCTTTTCTCCTTCTTCTCTTC
TCCTCCCCCTCTTCTTTTCTCTCCCCCTCCCCCGTCCTTCTCTTTTTTCT
TTCTTCCACCGCCCCCCCTCTCCCCTCTCTTCCCTCTCTTTTCTCCCCCC
CTCTTTCTTTTTCCCCTTTCTCCCCTTTTTTTCCCCTTCCTTTCCG
GAAGTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAAAAATGACAGTCTGGCTGACACCTTGCC
TTTGGCCTTGTGAGACCCAGAACAAACAAATAGCTGAGCCACACTCTGCC
ATATTTCTGTCCTACAGAACTCGGGAGTGGATGATAAATGGTGGGGTGGC
CGTGTTAAGATCCTCACTCTGTGGTCATTTCTATGACAGCAACAGCAAAG
TAATGCACATGGTTGGCTTAGCATCTTAGTGTTCAGTAGAGCCGAGATAG
GTGGTGATATGATCTAGAACCTTTTCGTTCTCTCTAGCTCCTAAAGAAAA
GCAATATGTCTAAGTGTGGCCAGCATGGTAGGGGCTAGAGTGGGTGCTTT
CTGTACCTTATTATTAATAGTAGCCCTAGAAGAGCTGGTGCTTTTAAATT
ATTATTCTATTATTATCTTATTATATTATTATGCTTAATCATTATGGGTT
GTTGAACTTCTATCCCCATAGCTCCTTTTTCCCTTACATTTCTTCACCTC
CTTCCCTGTCTGTACGTCTTACCTCTTTTTTCTTATTCGCTTTTCTTTTT
ATTTTTTTTTCTCTTTCTCCAACATGGAGTCACCTTATCTTTTATTCTTC
TTGGAACCAAACCCAACAACTCTCCTAACCCAAATTATACAAATATTCTT
TTACCGTTAACTTCTATATATCACCTTTCTTCTTCCCTACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d16.g1 MSMg01no445_d16.g1 CHROMAT_FILE:
MSMg01no445_d16.g1 PHD_FILE: MSMg01no445_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:21 2005
         (382 letters)



>mm_chr14_29148730_29149511
          Length = 782

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%), Gaps = 1/383 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaa-atgacagtctggctgacaccttgcctttggccttgtgagacccagaacaaac 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagaaaacatgacagtctggctgacaccttgcctttggccttgtgagacccagaacaaac 259

                                                                       
Query: 60  aaatagctgagccacactctgccatatttctgtcctacagaactcgggagtggatgataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaatagctgagccacactctgccatatttctgtcctacagaactcgggagtggatgataa 319

                                                                       
Query: 120 atggtggggtggccgtgttaagatcctcactctgtggtcatttctatgacagcaacagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atggtggggtggccgtgttaagatcctcactctgtggtcatttctatgacagcaacagca 379

                                                                       
Query: 180 aagtaatgcacatggttggcttagcatcttagtgttcagtagagccgagataggtggtga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtaatgcacatggttggcttagcatcttagtgttcagtagagccgagataggtggtga 439

                                                                       
Query: 240 tatgatctagaaccttttcgttctctctagctcctaaagaaaagcaatatgtctaagtgt 299
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatgatctggaaccttttcgttctctctagctcctaaagaaaagcaatatgtctaagtgt 499

                                                                       
Query: 300 ggccagcatggtaggggctagagtgggtgctttctgtaccttattattaatagtagccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggccagcatggtaggggctagagtgggtgctttctgtaccttattattaatagtagccct 559

                                  
Query: 360 agaagagctggtgcttttaaatt 382
           |||||||||||||||||||||||
Sbjct: 560 agaagagctggtgcttttaaatt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)