BAC Information

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BAC

Clone NameMSMg01-445H21
Chromosome14 (Build37)
Map Location 37,802,873 - 37,803,255
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665933, 4930474N05Rik, Gcap14
Downstream geneLOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445H21.T7 (MSMg01no445_h21.b1)MSMg01-445H21.TJ (MSMg01no445_h21.g1)
ACCAG534410AG534411
length726753
length of high quality
(start - end)
54 (68 - 121)383 (74 - 456)
definitionCHROMAT_FILE: MSMg01no445_h21.b1 PHD_FILE: MSMg01no445_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:42 2005CHROMAT_FILE: MSMg01no445_h21.g1 PHD_FILE: MSMg01no445_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGACTAACAAAATAAAGATCTTTTTGAGGGAAACTATTGTTGTTCTGCT
AAATGATCTTGTTGTCTAATGGNACACTAATAGTAAACAGGCTAGTTTCA
ATCATAAACCTGCTTTGGNACATAATACTAAGGGCGGTAAACACCNCTCA
CTTTGAGAGNNTATTATTGAACTTCTGCGAGAACTGAAAAGCTTCGAAGN
CAGAGAGGCTGATTACTAAAAACTANNNGGCCCCAACTTTTTTTCCTGAA
AGAAAAAAAGGGNAAGATAAAACNAAATGGCAGGGCGGAATTTTAAGGGA
ATAAAAAAAAAAACCTTTTTTAAAAGAAAAAACCTTTCGGGGCAAANANC
CNACACCCCCCCCCCCACCCAACNNCCTNNNCCCCCCACACCCCACCCAA
AAACACACCACATCAACAACAACAACCAACTCCAACCCCCCCNCNNCCCC
ACANNAACACCNNCCCCCCCAACCACACAAACACCCAAAAAAATTCANCT
ATTAAAACCCATTATCCAAATATAAAACAAACAACCAACACAATTATAAC
CAACAAAACACAAAAACAACCACTACCCCACTTTCCANACCAAACATATA
CTTCCCCCCACCCCCCCCCTCATCCCCCCCACAACCAAAACCCTATTTTC
CTTTTCTCTTTTTGTTTGGGGTGTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATTGAGTTGATTGAGCAAGAATCCCC
TTAGCCTTCATGCTTCTTCCTGGGACTTTTCTATCCACCCACCCAACCTT
GGCCATAAGTATTCAGATGGAGCTCTCTCATCTACCCCTTTCAAGGAAAG
TCTTTCTTACATCTTTAATAGGACTTAGGAATAAAACTGTTGAAACACCT
GCTGGTTGAAGAGCTGCTACAATGTAACACCCAGAGGGATGATTCTGGTT
TCAGTGGTTAAACAGTTACAGAAAGCAATCACAGTGGTCTGTCAGCTGGT
TTATATTTAACCAAGAATGGGCTGGGGAACCCTGCCAGAGGAGTCCCTGG
CCATGCTCAGGCCACTGTGCCCAAGCTCATCCCTTGGCATCCTTCCTCTG
AGGAAGAGAAGAGCCTGTAGAAAGGAAACAGAGAACCTCAGAAGGAAGGG
GCTGACTTATTTCCTGGAGAATTAGAAGGAAATTAAGGTCAAATTCCCTT
AATTCAAAATTCAAATCCCGGCGGGATTATAATCATTATACTTTTTAAAA
AAAAAAATGGGGAGGTGGCAAAAATTGAAAATGGTCCCCGCATAAAAAAA
AAAAATTCTCCCCCCAAGGCTTTTATAATCTAACACCCCCTCTGGGGGGT
TTTTGTCTTTTTACAATTATCCTCTGCCCCACCATTAACCCCTCCTATAA
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_h21.g1 MSMg01no445_h21.g1 CHROMAT_FILE:
MSMg01no445_h21.g1 PHD_FILE: MSMg01no445_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:42 2005
         (383 letters)



>mm_chr14_37802673_37803455
          Length = 783

 Score =  663 bits (343), Expect = 0.0
 Identities = 373/387 (96%), Gaps = 8/387 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgagttgattgagcaagaatccccttagccttcatgcttcttcctgggacttttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgagttgattgagcaagaatccccttagccttcatgcttcttcctgggacttttcta 260

                                                                       
Query: 61  tccacccacccaaccttggccataagtattcagatggag----ctctctcatctacccct 116
           |||||||||    ||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 261 tccacccac----ccttggccataagtattcagatggagctctctctctcatctacccct 316

                                                                       
Query: 117 ttcaaggaaagtctttcttacatctttaataggacttaggaataaaactgttgaaacacc 176
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcaaggaaggtctttcttacatctttaataggacttaggaataaaactgttgaaacacc 376

                                                                       
Query: 177 tgctggttgaagagctgctacaatgtaacacccagagggatgattctggtttcagtggtt 236
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 377 tgctggttgaagagctgctacagtgtaacacccagagagatgattctggtttcagtggtt 436

                                                                       
Query: 237 aaacagttacagaaagcaatcacagtggtctgtcagctggtttatatttaaccaagaatg 296
           |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||
Sbjct: 437 aaacagttacagaaagcaatcacagtggtctgtcagctagtttatatttaactgagaatg 496

                                                                       
Query: 297 ggctggggaaccctgccagaggagtccctggccatgctcaggccactgtgcccaagctca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggctggggaaccctgccagaggagtccctggccatgctcaggccactgtgcccaagctca 556

                                      
Query: 357 tcccttggcatccttcctctgaggaag 383
           |||||||||||||||||||||||||||
Sbjct: 557 tcccttggcatccttcctctgaggaag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)