BAC Information

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BAC

Clone NameMSMg01-445L05
Chromosome14 (Build37)
Map Location 111,299,325 - 111,299,881
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L05.T7 (MSMg01no445_l05.b1)MSMg01-445L05.TJ (MSMg01no445_l05.g1)
ACCAG534569AG534570
length744734
length of high quality
(start - end)
564 (37 - 600)482 (68 - 549)
definitionCHROMAT_FILE: MSMg01no445_l05.b1 PHD_FILE: MSMg01no445_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:00 2005CHROMAT_FILE: MSMg01no445_l05.g1 PHD_FILE: MSMg01no445_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
TTCTCTCGTACCCCATTTTAAATAGGTTTTGCTGTTGTTGTTGTTGTTGT
TTTTCAGAGTCTAACTTCTTGAGTTCTTTTCAGTTTGCTTTTTTATACAA
TCCAGAATCACATGCCTGGAATGCCATAACCCACAGCGGGCTAGACTCTC
TCTCAGCAATTAGTAATGAATGACACACCAATGTGATGATGAAAATTCCT
CAAAGGAACTTCCCTCTTCCAAAGTGACGCTAGTTTTCTCCCAAAAAGGA
AAAATATTGTAAATCGTTCCATTCTTATCTCTTTGTACAAAGCTCATATC
CAAGTGGATAAAGGACCTCCACATAAAACCAGAGACACTGAAACTTTTAG
AGGAGAAAGTGGGGAAGAACCTTGAGCACATGGGCACAGAGGACATGTTC
CTGAACAGAATAACAGTATCTTATGTTCTAAGATCAAGAATAGACAAATG
GGACCTTATAAAATTGCAAAGCTTCTCTAAGGCAAAGGACACTGTCAATA
GGGCAAAAGGCAACCAACAGATTGAGAAAAGATCTTTACCAATGTTACAT
CTGATAGAGGGCTAAAATCATATGCATACAAAGAACTCGAGAAGACAGAC
TCCAGAAAAACTTATAAACTTAATTTAAAAATGGAGTACAGAGCTAAACC
AAGAAATCTTCCCCTGGAGGAACCCAGAATTGATTGAGAACCCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAACAGCAAATCTGGAGGAAGGAGGTTAGGGG
TATCCTCTAGAATACACCAGAGATCTGGGAGGTGAGAGACTCTTAGGATT
TAAAGGGAAAGAACTTAGATGACAGTAGGGAGAGGGAAATTATAGAGCCC
ACCTCCAACAGAAAGACAGGGCATCAAATGAGGGAGGGGTTTGACATCCC
ACAGTCAAAACTCTGATCCATAATTGTTCCTCTCTGAAAGAACTGTAGAG
ATAGAAATGGAGAGGAGCCTGAGGAAAAGAAGGTCCTGAGATAGGCCCAA
AGTGGGATCCAGATCACGGGGAGGTTCTAAGACCTGACATTATTACTGAG
GCTATGGAGTGCTCACAAAACGGGACCTAGCATGACTGCCCTTCGGAAGA
CCCAACAAGCAGCTGAAAAAGCCAGCTGCAGATATTTGCACCCAACCAAA
GGACAGAAATTGCTGACCCCTGTGGTTGAAATAGGGAAAAGCTGGCATAA
GCTGACGAGGAGGATGACCATGTAGGACAACCAGCAGGCTCAATTAATCA
GGACCCCACAGATCTCTCAAATACTGGACCCCCTACCAGGTCATATAAAC
CAATTGGTAGTGAACTCCCTTGAAGATCTAACTACACATCTGTTTATCAT
GTGTTGAAAACCATGGTCTATCCCCTGAAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l05.b1 MSMg01no445_l05.b1 CHROMAT_FILE:
MSMg01no445_l05.b1 PHD_FILE: MSMg01no445_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:00 2005
         (564 letters)



>mm_chr14_111299325_111300288
          Length = 964

 Score = 1004 bits (519), Expect = 0.0
 Identities = 549/559 (98%), Gaps = 2/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttattctctcgtaccccattttaaataggttttgctgttgttgttgttgttgt 64
           ||||||||||  || | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 557 gaattcttta-actat-gtaccccattttaaataggttttgttgttgttgttgttgttgt 500

                                                                       
Query: 65  ttttcagagtctaacttcttgagttcttttcagtttgcttttttatacaatccagaatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttcagagtctaacttcttgagttcttttcagtttgcttttttatacaatccagaatca 440

                                                                       
Query: 125 catgcctggaatgccataacccacagcgggctagactctctctcagcaattagtaatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catgcctggaatgccataacccacagcgggctagactctctctcagcaattagtaatgaa 380

                                                                       
Query: 185 tgacacaccaatgtgatgatgaaaattcctcaaaggaacttccctcttccaaagtgacgc 244
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 379 tgacacaccaatgtgatgatgaaaattccccaaaggaacttccctcttccaaagtgacac 320

                                                                       
Query: 245 tagttttctcccaaaaaggaaaaatattgtaaatcgttccattcttatctctttgtacaa 304
           ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 319 tagttttgtcccaaaaaggaaaaataatgcaaatcgttccattcttatctctttgtacaa 260

                                                                       
Query: 305 agctcatatccaagtggataaaggacctccacataaaaccagagacactgaaacttttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agctcatatccaagtggataaaggacctccacataaaaccagagacactgaaacttttag 200

                                                                       
Query: 365 aggagaaagtggggaagaaccttgagcacatgggcacagaggacatgttcctgaacagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aggagaaagtggggaagaaccttgagcacatgggcacagaggacatgttcctgaacagaa 140

                                                                       
Query: 425 taacagtatcttatgttctaagatcaagaatagacaaatgggaccttataaaattgcaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 taacagtatcttatgttctaagatcaagaatagacaaatgggaccttataaaattgcaaa 80

                                                                       
Query: 485 gcttctctaaggcaaaggacactgtcaatagggcaaaaggcaaccaacagattgagaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gcttctctaaggcaaaggacactgtcaatagggcaaaaggcaaccaacagattgagaaaa 20

                              
Query: 545 gatctttaccaatgttaca 563
           |||||||||||||||||||
Sbjct: 19  gatctttaccaatgttaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)