BAC Information

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BAC

Clone NameMSMg01-446H22
Chromosome14 (Build37)
Map Location 29,184,927 - 29,185,170
singlet/doubletsinglet
Overlap geneErc2
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446H22.T7 (MSMg01no446_h22.b1)MSMg01-446H22.TJ (MSMg01no446_h22.g1)
ACCAG535175AG535176
length767763
length of high quality
(start - end)
279 (33 - 311)244 (85 - 328)
definitionCHROMAT_FILE: MSMg01no446_h22.b1 PHD_FILE: MSMg01no446_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:02 2005CHROMAT_FILE: MSMg01no446_h22.g1 PHD_FILE: MSMg01no446_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTCACCTGAT
GACTACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAAT
CATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAG
CCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGA
TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGT
ACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATCG
TACTACCGTTGTTTTCTAGCAATACCTCTCCTGGGCATATATCCAGAAGA
TGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCT
TATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG
AGGTCATCATCCTGAGCGAGGTAACACATTTCCCAAGAAACTCCCCCACA
TGTATTCCCTGATAAGCGGAAATTACCCCCTAACCTAGGGAACCCAACGA
TTTTATATTTACTTTGCTCACCACTTGATAACTCCCCAAGAAAGGAAACT
CTGTGCGTGGGCCACTAATGCCTCTTTCTCTAAATTTGTGAACCACACCC
CCCCTGGTATGATGTTC
CCCAACCCCACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTAACACCAAAAGC
TCCCCGAGCGCCACACAAAGCAAATGCTATACTCCATTAGGCTGAAATGT
GTAAGCAGAGTTCAAACCCAAACCGAGCTGTCCTTCGCAGCAGGCTGGGC
TGCATCAGGGCTTATGCGCTTGTACACTGATCCTCTCACATGCCTGCAAC
TCCCTGCTTCATCTGTTCATAATCAGCTCCAGATTCTCTATGGCTCCCAC
AGTGTGAGCCGTGGAGCTTCGGATTTGGTTTTTTTTCTGTTGAAGGGTAT
GGAAGTACACAGGAAATCTGAATAGAAATACACTCCCAACTGAAGTTACG
GTCCCTATCCCTGAGAAGGGACGAATGGACAACATAACTTGGAAGCTAAC
TAGTTCATCCCAAGAGACTGTTAGAGCACGGATGTGTACAAGGATGGGAT
GTATAAATGGATGGGATAGGTATTGACCCTCGCCACCACCACTCAGATTT
TTACTGTTCTCCCTTTCCCCTTTTTTCTTTCACAACCCCCCCTCTTTTCC
CCCCCTTTATTCCCTTTCCCCCCCCCTCTTTCACCCCTCCCCCACCACCT
CTTCCCTTGAACTCCTCTTTTTTTTTACTCACACAGTCCCCCTCCTCCGC
CTACTCTTCATTTTTAACACCACACCGTCCGTACCCTTTCCCCTCTCCCT
TCATTCTTGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_h22.g1 MSMg01no446_h22.g1 CHROMAT_FILE:
MSMg01no446_h22.g1 PHD_FILE: MSMg01no446_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:02 2005
         (244 letters)



>mm_chr14_29184727_29185370
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttaacaccaaaagctccccgagcgccacacaaagcaaatgctatactccattaggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 444 tgttaacaccaaaagctccccgagcgccacacaaagcaaatgctagacttcattaggctg 385

                                                                       
Query: 61  aaatgtgtaagcagagttcaaacccaaaccgagctgtccttcgcagcaggctgggctgca 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 aaatgtgtaagcagagttcaaacccaaaccgagccgtccttcgcagcaggctgggctgca 325

                                                                       
Query: 121 tcagggcttatgcgcttgtacactgatcctctcacatgcctgcaactccctgcttcatct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 324 tcagggcttatgcgcttgtacactgatcctctcatatgcctgcaactccctgcttcatcg 265

                                                                       
Query: 181 gttcataatcagctccagattctctatggctcccacagtgtgagccgtggagcttcggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttcataatcagctccagattctctatggctcccacagtgtgagccgtggagcttcggat 205

               
Query: 241 ttgg 244
           ||||
Sbjct: 204 ttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)