BAC Information

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BAC

Clone NameMSMg01-446N14
Chromosome14 (Build37)
Map Location 97,576,343 - 97,576,584
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N14.T7 (MSMg01no446_n14.b1)MSMg01-446N14.TJ (MSMg01no446_n14.g1)
ACCAG535446AG535447
length1,467755
length of high quality
(start - end)
---242 (88 - 329)
definitionCHROMAT_FILE: MSMg01no446_n14.b1 PHD_FILE: MSMg01no446_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005CHROMAT_FILE: MSMg01no446_n14.g1 PHD_FILE: MSMg01no446_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGACCACACTATTGGAATGATGAAAATTCCTCAAAAAAGGGGGGGGGGA
GATGGGAGCGTAAATATTTCCTCACAATAGAGAACCGCGCGCACAGTAAC
CAATCGTTATATAAAAAGACTCGCGAGTTTGCGCAGACGTGATGTTGGCA
TAGATTTTGAAGTTGCGTCGGTCGCGGCGTCGCAAGCAGTGTGGGAGTGC
GCCGGACAGGATTGTATGAGCCTCACACTGCGCGGATAGATAATTATTGT
CGCCAACCCGTCGCCAAACATATACATTCTACACGCTTGTGGCCTATAGA
TTTATTACCGGTGAGAAACAGCGTCGGGGTTCGCTGCGTATATTTGCGGA
CTGCCAGTTATACACCTTGAACTAAGAAAATCGTGGCTGGTACTCATACG
CGTGATACCACAGTATCCGCCTATATGGTGCGCCCTTATTCGACACAATG
CTCGCGCACTCTAAATCGTTATTTCGGCGTGGTGATTGAGCGGATTCGTA
GATTTAGTATAACTCGTGCTGACCGCGGTTTCGATTCTTACCTTGTTGTT
CATTCTCCTCCTACCGTGTGTGACGCGCGCGAGTGCCTCAGTATGTGCGA
TCGGCAGCATCTTGTCGTGTGTCGCCGCGCGTCGCGTTATCCACACTCAG
TGAGTCGGCGCGCCTTGATACGGCGCGCTGTCGTATGGCGTGCATTAAAC
TATAAAGACGCNACTTACGCTCCATGTTACGATTCGTGTTCTTACTCTCT
CTGTGAGCCTGGTGCCCGCGGGTCGCGTTGTATTTGTTATCCCGCGACAT
AACTATTCTCACACGCCATGTTATCTATGATATGAGTAGATGGTGCGGGA
TGGTAGCGTCGTGGCATCGGACGCAGACTNGATGGTTGTGATCTGGCGCT
ACGTTATGACGCCAACATACAGCACATGGTATATTAACCGTAGTGANACA
GACGTGCGCGCCGCCAACACTGCGTGTACGGCGGATNATCGTGCTATGGT
TGGAGCGGATATCGCATACTGGCGAACGCAGAGCATGTTGCAAGCTGCTA
TATCGACCGGATGATCTATCGTACCTGCTCTATNACATGTCTCCGTCTGA
TAGTATGATACATCTCCTTGTCACATCCACTACATACCGATCGCATAATT
CTACGGCCGGGCGTCATNATATCTGCATAATGTCTCGCGTCTCCGGTCGT
CGCATGCATCGATGGTGATACCTGCGCGGTGTATCCATCGCATCGTTATC
CTCGCAGCGTCTATATAGTGTCGCTGCTAACCGCGCGAGTTGCTGGCGAC
CTATAGGTCGTCGGCGCTGCCTCATCATCAGTGCACTACGACGACGAGTA
TATCAGACGATAATCATTACTATCGNTACTTCTCACTCTCACGAGCGGTG
TATTATGCCTCACGCNTCTACGTCACACGTCAACCTTCGTATACGATAGT
CCGATCATGACTATCGN
NTTGTCGAANNCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCATTGTGT
ATTAAATGATTGATACTATTTCTGCAAAGTACTAAACAGGATATTTAAAT
TTGAGAAAGATATAGCAAGTGTTTATTTTGATTACTTCCTGTCTACCAAT
AGAAGTAATAATCTTGTTGAATAATTTAGACATAAAATAAAGGGCACATC
AGCCGTGAAATCTGTCTTCTCTGAATTACTGTGAGAAACAATAAAATACA
TCTCATTTGGAAGAAGCCCACAAGAACTCTACATACTGAATTTGTAATTT
ATTTATGTATTATGTATTTATTTATTTATGTATTTATGTACTGCTGNCCC
GCCTTTTTCCCTTTCCCTTTCTCCTTCCCCTTTTTTCTTCTTTTTTTTTT
TCCCCCCCCCCTTCTTCCCCCTTTTTTTTTTTTCCTCTTTTCCTCCTTTC
TTTACCCCTCCCTTCCCCTTTCCCTCTCCCTCCCCCCCTCCTCCTTTTTC
CCTTTCTCCCTTCCCCCTTTTTCCTTCCCCCCCCCCCTTTTTTCCCCTTC
CTTTATTCCCTTTTCCCCATCCCCTTTTTCCCCTCCCTCCCCCCTTTTTC
CTTTTTCTCTAAAACTCCACTTCCTTTCTTTTTTCTTTTCCCCCCTTCCA
TTTATTTTTCATCCAATCCTCCTTTCCCCTTTTCTCTTCCCTTTTATATT
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n14.g1 MSMg01no446_n14.g1 CHROMAT_FILE:
MSMg01no446_n14.g1 PHD_FILE: MSMg01no446_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:30 2005
         (242 letters)



>mm_chr14_97576143_97576784
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctcattgtgtattaaatgattgatactatttctgcaaagtactaaacaggatattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctcattgtgtattaaatgattgatactatttctgcaaagtactaaacaggatattta 260

                                                                       
Query: 61  aatttgagaaagatatagcaagtgtttattttgattacttcctgtctaccaatagaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttgagaaagatatagcaagtgtttattttgattacttcctgtctaccaatagaagta 320

                                                                       
Query: 121 ataatcttgttgaataatttagacataaaataaagggcacatcagccgtgaaatctgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ataatcttgttgaataatttagacataaaataaagggcacatcagccgtgaaatcagtct 380

                                                                       
Query: 181 tctctgaattactgtgagaaacaataaaatacatctcatttggaagaagcccacaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctgaattactgtgagaaacaataaaatacatctcatttggaagaagcccacaagaac 440

             
Query: 241 tc 242
           ||
Sbjct: 441 tc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)