BAC Information

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BAC

Clone NameMSMg01-448B06
Chromosome14 (Build37)
Map Location 13,307,774 - 13,308,245
singlet/doubletsinglet
Overlap geneCadps
Upstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448B06.T7 (MSMg01no448_b06.b1)MSMg01-448B06.TJ (MSMg01no448_b06.g1)
ACCAG536377AG536378
length762731
length of high quality
(start - end)
395 (47 - 441)471 (85 - 555)
definitionCHROMAT_FILE: MSMg01no448_b06.b1 PHD_FILE: MSMg01no448_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:12 2005CHROMAT_FILE: MSMg01no448_b06.g1 PHD_FILE: MSMg01no448_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCATCGTTCCAAGACTTTTATCATGAACAGGTGTTGGATTTTG
TCAAATGCTTTCTCCGCATTTAACGAGGTGATTATGTGGTTTTTGTCTTT
GAGTTTGTTTATATAATGGATTACGTTGATGGATTTCCATATATTAAACC
ATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATAGATGATTGTT
TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTGC
ATCGATATTCATAAGGGAAATTGGACTGAAGTTCTCTTTGTTGGATCTTT
CTGTGGTTTAGGTATCAGAGTAATTGTGGCGTCATAGAATGAGTTGGGTA
GAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGAATT
AGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCC
TGGGCTTTTTTTGTTTGGGAGACTATTATTGACTGCCTCTATTTTTTTAG
GCTTTATGCTACTGTTTTAATTGTTTACCTGACCTTGGTTTTTCTTTTGC
TTCCTGGTTTCGGGGATAAAGACCTCATCCACATTTACTTCGTATTTCCC
TTCCCGTTCATTCTCCTTCCCCTTTTTTTCTTTCCTCCTTTTTCTGATTT
CTTCATTTTTTCCTACGTGCCATATTTACCTTACCTTACCCCTTTGTTTT
TTTTATCTCTAG
CGAAATATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCTGTACATGACAT
CAGAGATAGAAATAAAGTAATTTCCACCAGTATTTTTATTCAATTTACCT
ATGAAGTGCAAATGCTTTTTTTTTTAAATGTTTTAAGAAATCTAAGATGC
TTAAGTAAGGACTGCCTGAAGATTTGTGATTTTATTTGAAATGCAAGACT
TTTCGATTGACTACAATAAACAGCAATAGATACACATTATGTGTACATGT
GCATGCAGTCATTGATGAGTGTGTGCAAATGTACACAGGTATGTGTATGT
CTGGTATGTATTATATATACCAACAGTATGTTTAATAAACCTCGTATAAT
TTGACTTGAACATGTGACCACTGAAGTACATGGGCTATGAGTCTTTAATC
TAGACTACTTGACTGCCAATTAACCCATGTAGCTCAACTTCTACCTATTG
CTAATTAGTTGTGGCTCCATTATCTGTAGCTTAAGCCACTTTAGTGAGGC
ACAGCTACCTTTTCCCTATTTGCTCAAACAGTTGAATTGTTTACTCTGCG
GTAATAACTATATTAGCCATGGACTCCGTAGGAGGGTGTTTTTAAAGAAA
AAAATGGGCAAATACCCTTTCTCTCCCACTTCCCCCAGGGCCGCCAATTA
ACCCCGCCCTTATACCGACCCTCTACCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_b06.g1 MSMg01no448_b06.g1 CHROMAT_FILE:
MSMg01no448_b06.g1 PHD_FILE: MSMg01no448_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:12 2005
         (471 letters)



>mm_chr14_13307574_13308445
          Length = 872

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%), Gaps = 1/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctgtacatgacatcagagatagaaataaagtaatttccaccagtatttttattcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctgtacatgacatcagagatagaaataaagtaatttccaccagtatttttattcaat 260

                                                                       
Query: 61  ttacctatgaagtgcaaatgc-ttttttttttaaatgttttaagaaatctaagatgctta 119
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttacctatgaagtgcaaatgcttttttttttttaatgttttaagaaatctaagatgctta 320

                                                                       
Query: 120 agtaaggactgcctgaagatttgtgattttatttgaaatgcaagacttttcgattgacta 179
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agtaaggactgcctgaagatttgtgattttttttgaaatgcaagacttttcgattgacta 380

                                                                       
Query: 180 caataaacagcaatagatacacattatgtgtacatgtgcatgcagtcattgatgagtgtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataaacagcaatagatacacattatgtgtacatgtgcatgcagtcattgatgagtgtg 440

                                                                       
Query: 240 tgcaaatgtacacaggtatgtgtatgtctggtatgtattatatataccaacagtatgttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaaatgtacacaggtatgtgtatgtctggtatgtattatatataccaacagtatgttt 500

                                                                       
Query: 300 aataaacctcgtataatttgacttgaacatgtgaccactgaagtacatgggctatgagtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaacctcgtataatttgacttgaacatgtgaccactgaagtacatgggctatgagtc 560

                                                                       
Query: 360 tttaatctagactacttgactgccaattaacccatgtagctcaacttctacctattgcta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tttaatctagactacttgactgccaattaacccatgtagctcaacttctacttattgcta 620

                                                               
Query: 420 attagttgtggctccattatctgtagcttaagccactttagtgaggcacagc 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attagttgtggctccattatctgtagcttaagccactttagtgaggcacagc 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)