BAC Information

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BAC

Clone NameMSMg01-449D24
Chromosome14 (Build37)
Map Location 98,849,073 - 99,014,553
singlet/doubletdoublet
Overlap geneLOC635593
Upstream geneEG668659, Dach1
Downstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449D24.T7 (MSMg01no449_d24.b1)MSMg01-449D24.TJ (MSMg01no449_d24.g1)
ACCAG537268AG537269
length750764
length of high quality
(start - end)		649 (52 - 700)252 (80 - 331)
definitionCHROMAT_FILE: MSMg01no449_d24.b1 PHD_FILE: MSMg01no449_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:49 2005CHROMAT_FILE: MSMg01no449_d24.g1 PHD_FILE: MSMg01no449_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,849,073 - 98,849,717)(99,014,304 - 99,014,553)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTACCTGTTACGCTGATAAAGTCCAAAACCCAACAGGA
GCCTCCCCAGTGTACAGTGGAGCAGAAGCGGGCACCCGAAACTCATCTGG
AAGGGATTCATTAAAGAGAAGTGTATTTCCTATTACTATTTACAATAGCC
ACAGCTAGCCTTGATTCATTGTTTTTCTTCCTAGGGTTTCAAAGTACTTA
AATTACCATGATCAAAAGTTTAATGGTGAATTAATGAGGGTGGTAACTGG
GCTTTTTCTATGTGCTCTTGGTGCATGCTTAATAATACAAATCAAGGCAA
CACTACTGGTAATTGGAGTAACTGAACATGAGACTAGGAGGGAACCTTCA
AGATTAACTGATTTACCTAAGGTCAGACAGCTAATTGTAACAAACCCTGA
CTAGGATCCAGTCAATCAATTCTCCATTCAATATTTGCTGCGTTGGTCAC
CTCTGAAGCATACTTCACTTTTAGTTATGCTTTCCACCCAATTCTATACT
TGTGTGAAATACTCAGCTTCGGTACTTACACCATGCAGCAACCTAGAATT
TATCTCCTACGGCACAAGCATAGAGAGCCACCACAGACCTTAGTTAGGGA
ATTTTCATTGTGCNAATCTGGACCTGAAAACCTTGCTAACAAACTTATAA
TAGAAAACAGAGGCTTTTTTCCCCCCAGACAAAGCCACTGGTGGTGTTAN


NNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCCGAAATTCTGCACTAAAACCACCTGTCCC
TGTTTTTTTTTCCCTTGGGGTCGGTGGGAGACTTAATGACTGCTTCTGTT
TCACTAGAGGTTATAGGACTGTTTGAAAATGTGCTGTTGTATACAAGAGT
GTCTGTCCTTTTGTGCATGGGGGCATGTAATATCACATTTGGGAAAACAA
AGAAGGGTGTTGGTTAAAAAATGTATCTCTCTTGAGAGAGAGAGAGAGAG
AGGGAGAGAGGGAGAGAGGAAGAGAGAGATTAATATTTTGAGNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTTTTTCCCCCTNTTTTTTTGGGGGGGTGG
GTTTTTGTTTTTTTTTTTTTTTTTTTNGGTTTTTTTTTTTTTTTTTTTTG
TGGNTTTGTGTTTTNTTGTTTTTTTTGGTTTTTTTTGTTGGTTTTGTTGG
GTTTTTTTTTTTTTTTGTGTTGTTTTTTTGTGTTGTGGTTTTGGTGGGTT
TTTTTGGTTGGTTTTTTGTGGTGTGTGGTTTTTTTGTTGTTTTGTTTTGT
TTGNGTTTTGTGTGTTTTTGTTTGTTTTGGTGTTTGTTTTGTGTTGTTGT
TTTTTTGTTTTGGTTGTTTTGTTGTTTTTTTTTTTTTTTTTTTTNGNGGG
TNGTGTGTTTGTGGGTTTGGTGTTTGTTGTGTGTGTTTGGTTTTGTTGGT
TTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_d24.b1 MSMg01no449_d24.b1 CHROMAT_FILE:
MSMg01no449_d24.b1 PHD_FILE: MSMg01no449_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:49 2005
         (649 letters)



>mm_chr14_98848869_98849917
          Length = 1049

 Score = 1218 bits (630), Expect = 0.0
 Identities = 641/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctacctgttacgctgataaagtccaaaacccaacaggagcctccccagtgtac 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctacctgggaggctgataaagtccaaaacccaacaggagcctccccagtgtac 264

                                                                       
Query: 65  agtggagcagaagcgggcacccgaaactcatctggaagggattcattaaagagaagtgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtggagcagaagcgggcacccgaaactcatctggaagggattcattaaagagaagtgta 324

                                                                       
Query: 125 tttcctattactatttacaatagccacagctagccttgattcattgtttttcttcctagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcctattactatttacaatagccacagctagccttgattcattgtttttcttcctagg 384

                                                                       
Query: 185 gtttcaaagtacttaaattaccatgatcaaaagtttaatggtgaattaatgagggtggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttcaaagtacttaaattaccatgatcaaaagtttaatggtgaattaatgagggtggta 444

                                                                       
Query: 245 actgggctttttctatgtgctcttggtgcatgcttaataatacaaatcaaggcaacacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgggctttttctatgtgctcttggtgcatgcttaataatacaaatcaaggcaacacta 504

                                                                       
Query: 305 ctggtaattggagtaactgaacatgagactaggagggaaccttcaagattaactgattta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggtaattggagtaactgaacatgagactaggagggaaccttcaagattaactgattta 564

                                                                       
Query: 365 cctaaggtcagacagctaattgtaacaaaccctgactaggatccagtcaatcaattctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctaaggtcagacagctaattgtaacaaaccctgactaggatccagtcaatcaattctcc 624

                                                                       
Query: 425 attcaatatttgctgcgttggtcacctctgaagcatacttcacttttagttatgctttcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attcaatatttgctgcgttggtcacctctgaagcatacttcacttttagttatgctttcc 684

                                                                       
Query: 485 acccaattctatacttgtgtgaaatactcagcttcggtacttacaccatgcagcaaccta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acccaattctatacttgtgtgaaatactcagcttcggtacttacaccatgcagcaaccta 744

                                                                       
Query: 545 gaatttatctcctacggcacaagcatagagagccaccacagaccttagttagggaatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaatttatctcctacggcacaagcatagagagccaccacagaccttagttagggaatttt 804

                                                        
Query: 605 cattgtgcnaatctggacctgaaaaccttgctaacaaacttataa 649
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 805 cattgtgcaaatctggacctgaaaaccttgctaacaaacttataa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_d24.g1 MSMg01no449_d24.g1 CHROMAT_FILE:
MSMg01no449_d24.g1 PHD_FILE: MSMg01no449_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:49 2005
         (252 letters)



>mm_chr14_99014052_99014703
          Length = 652

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcactaaaaccacctgtccctgtttttttttcccttggggtcggtgggagacttaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 tgcactaaaaccacctgtccctgtttttttttcccttggggtcggggggagacttaatga 443

                                                                       
Query: 61  ctgcttctgtttcactagaggttataggactgtttgaaaatgtgctgttgtatacaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgcttctgtttcactagaggttataggactgtttgaaaatgtgctgttgtatacaagag 383

                                                                       
Query: 121 tgtctgtccttttgtgcatgggggcatgtaatatcacatttgggaaaacaaagaagggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtctgtccttttgtgcatgggggcatgtaatatcacatttgggaaaacaaagaagggtg 323

                                                                       
Query: 181 ttggttaaaaaatgtatctctcttgagagagagagagagagagggagagagggagagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttggttaaaaaatgtatctctcttgagagagagagagagagagggagagagggagagagg 263

                     
Query: 241 aagagagaga 250
           ||||||||||
Sbjct: 262 aagagagaga 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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