BAC Information

Click to search

BAC

Clone NameMSMg01-449K08
Chromosome14 (Build37)
Map Location 66,031,851 - 66,032,092
singlet/doubletsinglet
Overlap genePnoc
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395
Downstream geneElp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449K08.T7 (MSMg01no449_k08.b1)MSMg01-449K08.TJ (MSMg01no449_k08.g1)
ACCAG537568AG537569
length767792
length of high quality
(start - end)
242 (79 - 320)79 (174 - 252)
definitionCHROMAT_FILE: MSMg01no449_k08.b1 PHD_FILE: MSMg01no449_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:19 2005CHROMAT_FILE: MSMg01no449_k08.g1 PHD_FILE: MSMg01no449_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAGAGGAGGCGC
GGAATCCTGGTGGTTTCAACTATCCAGGCTAGGGCATTTTGTTACAGCAG
CCAACAATTAAAATGAATGCTGGCTTCCTGAATACAGGGTTAGGATGCTC
ACCTTGACACTTCATACAGGAGATTTATAGAAAAGCAGATGATAGAATAT
ACATATATATTCATTCTCTCAGTTTTTCCTCTAGAGAACCCTGACTAACA
ACACCCCTGGATCAAACCTCTTGAATCAGAAAACTACTTCCTTTGGATCA
TGTCATTTTGGGTTGAACCATCTTGTTTGCTTCAATGGAAGGAGGAATAG
AAAACTAGTCTTCACTGTTAACTTGACACCTAAAGTCACTTGGGAAGAGA
GTCTTAATGAGGGATTGCCTAGTTCAGGTTGGTCTGGTGACGTATCCGTG
GGATTGCCTCGATTGTTATTTGATGTAGGAAGAGCCATCCCCTTGTAGGC
AGTGTCATTCCCTGGGCAGGAGGCATTGATCAGCATATTAGATGACAAAC
CCTACTGAGAGCCAGTATGTATACAAGGTTGTGTTTTGTCTTCCTTCTGC
CCTAATACTGAAATAAGAACGTGTTGATGAACCCTTCGTGTAGCGCCTTG
TAATCTTGCGCCTTCGACTGCAATTGATCTAGTCTATGCTATGGTAATGC
GCTAACCTCTACAACTATGCTGTTCTTTTTTAAAATGCACACTTTCTTTT
CTTCGATCTTTTTACGG
TTTCTCGATGAAGTGGGAGGCCTGGNGGNCGCCTGGTTTCGAAGTCGAGG
NGAACNANAGAAGGTTACCAGACCAGCTGGGAAANGCAGAAGNAAATTGG
NNCAAGCCAAGGGCGGGGCTTTATCCCCTCATTAACAGGAGAGATCATTT
GACTGCCTTCTGACTAATAGGTTAGTCTTACAAGAGGGAATGAGAAGCCC
ATGAGCGTCTTCATCACTGGCTCAGACAAGGGTGTTGGCAGAGGTGATGG
AGATTTTTTTGGTTAGGGGAAGGAAAGCCAAGCATGACACCTGAGGAGTT
GGGTGGGAATGTCGNATGTTTTGATATTTTAGCCACAGGGGNNCCCAGCA
AAAAGGGAGGATTTTTGTGCCCGCCATATTTTTAGTGTCCATGAAGCGTG
AAAAGATGATTTGGGACACCCCCTTTTATTATAATTTTGGGATTCCTATA
CCCACCGTTAAAACCTCCATTTTCCGTGTCTTTTCCATGCCCCCTAGATC
CTATGAAGTTTCCTTATATGTATGATTTTTTGACTCTTCTTCTACCCGCT
TTATGGTTATTATTATTGATATTATGTCTATCCATCGTGCTTACTACTTC
AGATAACCCATCCTAGCAATTTTCGCTATGCGCTTATATCTCTCACAATT
ATACCTTGACCTAAAACACCCATCAACGCACATTTTTTTTTTTTTTCTAT
GAGACGGCCGTCTCTCTTTTTATCTGTCACTTCCTTCCTTCGTTCACCAT
TTCTTTATCCTTCCTTATACCCTCTTGGATTTCGTCTCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_k08.b1 MSMg01no449_k08.b1 CHROMAT_FILE:
MSMg01no449_k08.b1 PHD_FILE: MSMg01no449_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:19 2005
         (242 letters)



>mm_chr14_66031651_66032292
          Length = 642

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagggcattttgttacagcagccaacaattaaaatgaatgctggcttcctgaatacagg 60
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| 
Sbjct: 201 ctagggcattttgttacagcagccaacaattaagatgaaagctggcttcctgaatacaga 260

                                                                       
Query: 61  gttaggatgctcaccttgacacttcatacaggagatttatagaaaagcagatgatagaat 120
            ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 261 attaggatgctcaccttgacacgtcatgcaggagatttatagaaaagcagatgatagaat 320

                                                                       
Query: 121 atacatatatattcattctctcagtttttcctctagagaaccctgactaacaacacccct 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacatatatattcattctatcagtttttcctctagagaaccctgactaacaacacccct 380

                                                                       
Query: 181 ggatcaaacctcttgaatcagaaaactacttcctttggatcatgtcattttgggttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatcaaacctcttgaatcagaaaactacttcctttggatcatgtcattttgggttgaac 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)