BAC Information

Click to search

BAC

Clone NameMSMg01-449L13
Chromosome14 (Build37)
Map Location 57,962,785 - 57,962,975
singlet/doubletsinglet
Overlap geneCryl1
Upstream geneAtp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140
Downstream geneLOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449L13.T7 (MSMg01no449_l13.b1)MSMg01-449L13.TJ (MSMg01no449_l13.g1)
ACCAG537625AG537626
length778725
length of high quality
(start - end)
247 (86 - 332)197 (128 - 324)
definitionCHROMAT_FILE: MSMg01no449_l13.b1 PHD_FILE: MSMg01no449_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:25 2005CHROMAT_FILE: MSMg01no449_l13.g1 PHD_FILE: MSMg01no449_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCTCTATAATTTGCGGNCGCTAAACGAATCACTATATTTCATAC
CACCGCGGAATTCCAGTGGAATTACAAGAACACCAGAGCCACCCAGTCAT
GTGGACTGAATAACTATTAGATGCTTGTACTTCCTGTGGGGACACAGCTG
TTGTTGAATCCCCTGAACCCAGTCATATATGTCCATACTCTTTCTATCAG
CTCTGCTCAACTAGACAACCCTGACTAATACAATCAGTACTCGGGTATTT
GATGTTTCTGTTGCTTTCAATTATTCCATAAAAAGGATTTCTTTTTTCTG
TTTAAGATTTTAAAAATTTGTATGTGCATGTCGGTGNTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTATGTTTTCCCCCCCCACCCNTNTTTTTTGCNCT
CTTCTTCTTCCTTTCTTTTTTTCCCCCCCCCCTCTTTTTTTTCTTGTTTT
TTTTCCCCCCTCCTTCCCTCTCTCCTCCTTCTCTCCTTTCTTCCCTTTCT
CTCTCCTCCTTTTTTTTCCTCTCTCCCCCCCCTTTTTTTTTCTCTTCNCT
CCCTCCCTTTTTTCCTTTTTCCCTCTCCTCTCTTTCCTTTTTCTCCCCCC
TCTTTTCTTTTCCTCTTCTCTTCTTTTTCTTCTCTCCTCTTTCTTTCTTT
TTTTTTCCTCTCCCTTTCTTTTTCTTTCCTTCCCTCTTTTTTTTTTTTTT
TTTTTCTTTCCCCTCTACNCCCCCCCCCTNCTTTTCTCCTTCTCCCTCTT
CCTCCCTTTTTTTCCCCTCTCTTTTTCN
NNNNNCCCATGAAGTGGGAGGCCTGGNGNCGCCTGGTTTCGAACCGGGGN
GAACNANAGAAGGTTTCAGAAATACGCTGNTGCCCCTGCAGCTGAAGAAA
GCAGGGATCATGGGCACCATGTACCCGCTCTTGGATCCTCAGCTGAGCCC
CGAATCACCATGCATGAGGACTTGAATAGACACAGTTATGGCAGAAGGTG
GAAGTAGAAAATACCATCAGTTCCTAATAATTCTATTATGCCACTCATGG
CTGTGTTTGTCTATCAGCCTAGCACTTGGGAGGCTGAGGTAGGAAGATCT
CAAATTCAGAGTCATCCTGTTTTCACTCGTTAAGCNAGNCAGGGCTACAG
ACTGAGACACTGTCTTACCCCCACCAAACACCAAATTAAAAGAAAAAAAG
CAACTCCCTAAACTCTACCCCCCCCCTCAGTCCTTAACTGGGATAGTTTC
TGATAGCAACTGTCACATCCGACTGTCGTCAGGACCATTTATGGTGCGAT
CCTCTTTGTGCTGGATGCTTTTGTTGATGTCTTCCCCAACCCACAGGCAG
GGAATCCCTTCCCTAGAGATTAAGAAATGCGCGAATGGAAACCGAGCGGG
GCCTTTCATTATAGTCCCTGTGAGTGAGGGGCAAGAAGGGTCCCTCCCTC
TAACAACAATTTTTTTTTTTTTGTAACCCCCCGAAGAACACGACACAATG
TGTTGTCTTCGTTTGGTGGTCTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_l13.g1 MSMg01no449_l13.g1 CHROMAT_FILE:
MSMg01no449_l13.g1 PHD_FILE: MSMg01no449_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:25 2005
         (197 letters)



>mm_chr14_57962659_57963255
          Length = 597

 Score =  325 bits (168), Expect = 1e-93
 Identities = 186/192 (96%), Gaps = 1/192 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttggatcctcagctgagccccgaatcaccatgcatgaggacttgaatagacacagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcttggatcctcagctgagccccgaatcaccatgcatgaggacttgaatagacacagtt 258

                                                                       
Query: 61  atggcagaaggtggaagtagaaaataccatcagttcctaataattctattatgccactca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 257 atggcagaaggtggaagtagaaaataccatcagtttctaataattctattatgccacgca 198

                                                                       
Query: 121 tggctgtgtttgtctatcagcctagcacttgggaggctgaggtaggaagatctcaaattc 180
           ||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 197 tggctgtgtgtgcctatcagccta-cacttgggaggctgaggtaggaagatcttaaattc 139

                       
Query: 181 agagtcatcctg 192
           ||||||||||||
Sbjct: 138 agagtcatcctg 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)