BAC Information

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BAC

Clone NameMSMg01-451M17
Chromosome14 (Build37)
Map Location 96,126,100 - 96,126,821
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451M17.T7 (MSMg01no451_m17.b1)MSMg01-451M17.TJ (MSMg01no451_m17.g1)
ACCAG539200AG539201
length769795
length of high quality
(start - end)		725 (45 - 769)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no451_m17.b1 PHD_FILE: MSMg01no451_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:10 2005CHROMAT_FILE: MSMg01no451_m17.g1 PHD_FILE: MSMg01no451_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGCCCTTCTCACTCAGCTGGGATTTTCATATAGTTAGTGACAAGA
AGTCATAGATTCTCTCTAAAACAATATATTTACACCTTCTAACCACTACG
TTAAATGGAAACTAAAAACAATAAACACAGCATAAAGGGCACTAGACACT
TTTGTTTTTGATACTGGACCTGAGTGTGATAATATTTAATTCTTATCATT
TTGAGGACACATAAATTTTACTTTCCAAAGACTATTCTGAAGAAGAAAGA
AAGTGGAAAAAACTCTCTGTCCATAGATATTAACAATAGATTGAGAGATA
TCAAGACAAATCAATATACCTTGAAGAAAGATAAGGACATTTGTAGACAT
GCAGAAATCATTACTGTGACTTTGCAGAGAACTCAGTTGCAAAAGGCATG
AGCCCAAGAAAAAGTGAATAAAATTATGTCAAGTGTCTTAAAAACTATGA
GACATCAAATATAAGAGAAACCCTATAGGCTATACAATGGGGAAAATATT
GATCGCAAGATCAGTGAATAGAAAACAGCTTTAACAGCAGTACAGGCCTG
ACACAATAGAGTTGTATTTGTTTATTATGAATTTTTGAGCTCCTATCATT
TCTCCTTTAACCTCTTTACCACAGAACACATATAATATATCGTTTACTTT
GTAAATATTTTTCCAAAAATTCACCTCCAACAGTCGAAAAAAGATAGTGT
CGCTGAGTTCATGATGCTG

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTT
TTAATGGGGTTATTTGTGTGGACTCTTTGCCCCTTCTTAGAATTGGGAAC
AAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGTGACAAA
ATGATGGACCATCTAGAGACTGCCATATCTGGGGATCCATCCCATAATCA
GCTTCCAAACGCTGACACCATTTCACACACTAGCAAGATTTTGCTGAAAG
GACCCAGATAGAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA
CAGAAGTGGATGCTCACAGTCAGCTATTGGGTGGATCACAGGGCCCCCAA
TGGAGGAGCTAGAGAAAGTACCCAAAGAGCTAAAGGGATCTGCAACCCTG
TAGGTGGAAGAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTAG
AGCTGCATATTTATCAGAAGATGGCCTAGTTGGCCATCACTGGAAAGAGA
GGCCCATTGGAATTGCAAACTTTATATGCCCCAGTACAGGGGCCAAAAAG
TGGGAGTGGTGGGTAGGGGGAAATTGGGGGGAANANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_m17.b1 MSMg01no451_m17.b1 CHROMAT_FILE:
MSMg01no451_m17.b1 PHD_FILE: MSMg01no451_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:10 2005
         (725 letters)



>mm_chr14_96125896_96127021
          Length = 1126

 Score = 1365 bits (706), Expect = 0.0
 Identities = 718/722 (99%), Gaps = 1/722 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcccttctcactcagctgggattttcatatagttagtgacaagaagtcatag 64
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcccttcttactcagctggggttttcatatagttagtgacaagaagtcatag 264

                                                                       
Query: 65  attctctctaaaacaatatatttacaccttctaaccactacgttaaatggaaactaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attctctctaaaacaatatatttacaccttctaaccactacgttaaatggaaactaaaaa 324

                                                                       
Query: 125 caataaacacagcataaagggcactagacacttttgtttttgatactggacctgagtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caataaacacagcataaagggcactagacacttttgtttttgatactggacctgagtgtg 384

                                                                       
Query: 185 ataatatttaattcttatcattttgaggacacataaattttactttccaaagactattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatatttaattcttatcattttgaggacacataaattttactttccaaagactattct 444

                                                                       
Query: 245 gaagaagaaagaaagtggaaaaaactctctgtccatagatattaacaatagattgagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagaagaaagaaagtggaaaaaactctctgtccatagatattaacaatagattgagaga 504

                                                                       
Query: 305 tatcaagacaaatcaatataccttgaagaaagataaggacatttgtagacatgcagaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatcaagacaaatcaatataccttgaagaaagataaggacatttgtagacatgcagaaat 564

                                                                       
Query: 365 cattactgtgactttgcagagaactcagttgcaaaaggcatgagcccaagaaaaagtgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cattactgtgactttgcagagaactcagttgcaaaaggcatgagcccaagaaaaagtgaa 624

                                                                       
Query: 425 taaaattatgtcaagtgtcttaaaaa-ctatgagacatcaaatataagagaaaccctata 483
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 taaaattatgtcaagtgtcttaaaaaactatgagacatcaaatataagagaaaccctata 684

                                                                       
Query: 484 ggctatacaatggggaaaatattgatcgcaagatcagtgaatagaaaacagctttaacag 543
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 ggctatacaatggggaaaatattgatcacaagatcagtgaatagaaaacagctttaacag 744

                                                                       
Query: 544 cagtacaggcctgacacaatagagttgtatttgtttattatgaatttttgagctcctatc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagtacaggcctgacacaatagagttgtatttgtttattatgaatttttgagctcctatc 804

                                                                       
Query: 604 atttctcctttaacctctttaccacagaacacatataatatatcgtttactttgtaaata 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atttctcctttaacctctttaccacagaacacatataatatatcgtttactttgtaaata 864

                                                                       
Query: 664 tttttccaaaaattcacctccaacagtcgaaaaaagatagtgtcgctgagttcatgatgc 723
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttttccaaaaattcacctccaacagtcgaaaaaagatagtgtcgctgagttcatgatgc 924

             
Query: 724 tg 725
           ||
Sbjct: 925 tg 926


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1126
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1116
Effective search space:   797940
Effective search space used:   797940
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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