BAC Information

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BAC

Clone NameMSMg01-451P19
Chromosome14 (Build37)
Map Location 121,164,793 - 121,165,436
singlet/doubletsinglet
Overlap genenone
Upstream geneHs6st3, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835
Downstream geneLOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451P19.T7 (MSMg01no451_p19.b1)MSMg01-451P19.TJ (MSMg01no451_p19.g1)
ACCAG539347AG539348
length739742
length of high quality
(start - end)
689 (51 - 739)665 (78 - 742)
definitionCHROMAT_FILE: MSMg01no451_p19.b1 PHD_FILE: MSMg01no451_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:25 2005CHROMAT_FILE: MSMg01no451_p19.g1 PHD_FILE: MSMg01no451_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGCTCCTCCTGCCATGCTTCACGTCATGATGATAATAG
ACTGAATCTCAGAACCTGTAATCCAGTCCCAATTAAATTTTGTCCTTTAT
AAGGACTGCCTTGTTCACAGCGGTAAAACCCTAACTAAGACAGAAGATGG
CACCAGGGACTGGAGTATTGTCGTGACAGGCCTGACCATGCCTTTGTTTG
GTAGAGTACTGATTATGAGACTTTATTTTTTTTAATATTTTTATTATTAC
GTATTATACTCAATTACATTTAGAATGCTATCCCAAAAGTTCCCCATACC
CCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTC
CCCTGTACTGGGGCATATACAGTTTGCGTGTCCAATGGGCCTCTCTTTCC
AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG
AGCTACGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC
AGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTAGGGGCC
CTGTGCTCCATCCAATAGCTGACTGTGAGCATCTACTTATGTGTTTGCTA
GGCCCCGGCCTAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCA
AAATCTTGCTAGTGTATGCAATGGTGTCATCATTTGGAG
NAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAAGATGACACGAGGCAG
ATTAAGTAAAGGAAGAACTTATTACGGAAAGGACCCAGTGGTGCAGATGG
GTTTCTCGAGACATGCGTAGTTGAACTTATATGTAAGCTTTGATAGCGAA
GGGGTTATTGATGACAAGAAGCAGGAGGAGTGGGGGCGGGGTAGGGGGGG
AGCAAGGGCTGCCCTAACAGGGCATGGTATCAGGTACTTGAGAGCAGGCA
ATGGTGCAAGTCCTATGTTATGGACATGCCACAAAATGAAGCGAGGTTGG
TTAGCAGCCCTCTGGGTCTGCGACACTGGTCCTGGTTGGCTTGGAGCAGT
CACGTGGTATCAACCTGCAGTTCTGTCTGGCCTATCCTGTATCACTAAGA
GTACAGTTAGGATTGATGTCTGAGGTAAGCTGCTGAAAATGTTGGCACTT
GGCTAACCTCAACTTCAGTGAGTTGGTTCTCATACATTAAAAAAGTCTGG
AGTTAATTTTCCCACCCCGTCCGTCCCCAGGTTATCAGGAGCATCCCCAG
GTTATCAGGAGCTCGGTGCAGCTCAGACTTGCTTTACTTTGTAATGGAGC
AGCGTTTTCTCTTTCTCAGCAACACTTTGTTCGAACCATCTGCCTCCTGT
CAGCTTTTGCACCTCAGCAGTCTTACCTTGTGTCCAGCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_p19.g1 MSMg01no451_p19.g1 CHROMAT_FILE:
MSMg01no451_p19.g1 PHD_FILE: MSMg01no451_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:25 2005
         (665 letters)



>mm_chr14_121164723_121165786
          Length = 1064

 Score = 1135 bits (587), Expect = 0.0
 Identities = 636/665 (95%), Gaps = 21/665 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacaagatgacacgaggcagattaagtaaaggaagaacttattacggaaaggaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caggacaagatgacacgaggcagattaagtaaaggaagaacttattacggaaaggaccca 655

                                                                       
Query: 61  gtggtgcagatgggtttctcgagacatgcgtagttgaacttatatgtaagctttgatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gtggtgcagatgggtttctcgagacatgcgtagttgaacttatatgtaagctttgatagc 595

                                                                       
Query: 121 gaaggggttattgatgacaagaagcaggaggagtgggggcggggtagggggggagcaagg 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 594 gaaggggttattgatgacaagaagcaggaggagtgggggcggggta-ggggggagcaagg 536

                                                                       
Query: 181 gctgccctaacagggcatggtatcaggtacttgagagcaggcaatggtgcaagtcctatg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 535 gctgccctaacagggcatggtatcaggtgcttgagagcaggcaatggtgcaagtcctatg 476

                                                                       
Query: 241 ttatggacatgccacaaaatgaagcgaggttggttagcagccctctgggtctgcgacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 475 ttatggacatgccacaaaatgaagcgaggttggttagcagccctctgcgtctgctacact 416

                                                                       
Query: 301 ggtcctggttggcttggagcagtcacgtggtatcaacctgcagttctgtctggcctatcc 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggtcctggttggtttggagcagtcacgtggtatcaacctgcagttctgtctggcctatcc 356

                                                                       
Query: 361 tgtatcactaagagtacagttaggattgatgtctgaggtaagctgctgaaaatgttggca 420
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 355 tgtatcactaagagtacagttagtattgatgtctgaggtacgctgctgaaaatgttggca 296

                                                                       
Query: 421 cttggctaacctcaacttcagtgagttggttctcatacattaaaaaagtctggagttaat 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 295 cttggctaacctcaacttcagtgagttggttctcatacgttaaaaaagtctggagttaat 236

                                                                       
Query: 481 tttcccaccccgtccgtccccaggttatcaggagcatccccaggttatcaggagctcggt 540
           ||||||||||||||||                    ||||||||||||||||||||||||
Sbjct: 235 tttcccaccccgtccg--------------------tccccaggttatcaggagctcggt 196

                                                                       
Query: 541 gcagctcagacttgctttactttgtaatggagcagcgttttctctttctcagcaacactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gcagctcagacttgctttactttgtaatggagcagcgttttctctttctcagcaacactt 136

                                                                       
Query: 601 tgttcgaaccatctgcctcctgtcagcttttgcacctcagcagtcttaccttgtgtccag 660
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgttcgaaccatctgccacctgtcagcttttgcacctcagcagtcttaccttgtgtccag 76

                
Query: 661 cgttg 665
           |||||
Sbjct: 75  cgttg 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space:   690370
Effective search space used:   690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)