BAC Information

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BAC

Clone NameMSMg01-453D06
Chromosome14 (Build37)
Map Location 49,712,490 - 49,877,354
singlet/doubletdoublet
Overlap geneLOC218997, Nat12, 1700011H14Rik
Upstream genePeli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik
Downstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453D06.T7 (MSMg01no453_d06.b1)MSMg01-453D06.TJ (MSMg01no453_d06.g1)
ACCAG540273AG540274
length756744
length of high quality
(start - end)		554 (82 - 635)417 (87 - 503)
definitionCHROMAT_FILE: MSMg01no453_d06.b1 PHD_FILE: MSMg01no453_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:59 2005CHROMAT_FILE: MSMg01no453_d06.g1 PHD_FILE: MSMg01no453_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,876,801 - 49,877,354)(49,712,490 - 49,712,906)
sequence
NAAAAAACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAT
GCGCGGAATTCACCACCACTCCCTCTTTTTCATTCTTCTCTCTCTACAAA
GTGAACAGCTATCCCCCTTAATATGTCCATTCCTTACCACAAGTCCTGAG
CTATGGCTCCAACTGTCATTGACTGAGACCTCTGAACTTCTGAGGCAAGT
TAACCCTTTCTCCTTTTAAATTGCTTTTTTCGGGCACTTTGTCCAGAGAG
CAGTGAAAAGTTGGTGCCATGTGTGCCTAAAAATTATGTAGTGCACCCAG
TGCATAGTTGGAGCTTTATATGCTGGGTGATATCTGTAGCTGTCATACAT
TTTAAATAACTAAAAGCACATGAGAATGACTTTGGTTGTGGGTATTTTTA
AAGCTGAAAGTTGGGTTTATAGATATGTGCATGCTTTGAAGTAGGATGGT
AAGACTGAAAATAGTGTAAAGCATTTGAAAGTTCTAGATCTAAAGTTCTC
CCAACTAAGGCTTGCCCTTGTCTCTCCTCAATGCTGTCTATGCCCCCACC
CTGTCTACCTGTCATCTATCCTTGGCTCACATGTGTTTCTAGCTAGCTAC
TTCCTCCACTCTGGTCTTCGCTGCCTTCCTACCTAGGACTGTGACCCTCA
TCTGTTATGTATGGTTAAGAGCACACTTTATAAGTACCATCTCTCAGACT
GCACACTGAAAGAATCATCCTGTTGTTGGGCCTGATGTTTTATCACATCA
ATGATA

CCCTTTCCTACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGGGCACAGC
TGTTGCTACTCTGCCAGTCTGGGCTCAGAGGCAAGGGAAACGCACACTGC
TTGGGGTTGACAAAGGAAACATCATTAAAGTGACTGTTTACATTGTGTTT
ATTGAAGTGTTCAAAGTGTGTGTGTTGCCTCTCCAAGCAGCCTGCAGCTC
TTCACAAGATTAACACTGCATGGCTGATAGTAAAAACTAGTTACATTGTG
GCTTTTAAACAGAATAGTATTTTTGCCTGGTTTTGGGGGGTTTGTTGAGT
TTTGGGGGGCGGGGGTTGCTGTACCTCAAGTGTATTCCATTCAGGCTGAG
GGACCTTTGCTTACTCACACACATTCTGTCCTTCCACGTCTTTCACATGG
CTTTCCTCTCACAAACTAGTAACGATTTTATTTCTTAATACACCAAAAAT
AATAAAGTGATTGTGAAATTACTGACAAGCTATCCAGTCGAGTAAGTGTG
TCCTGTATCGCTACCTCCAGATTGGTGTGGGACTCTTGTGAGCTACTTTT
ATCTTGCTCTCCCTCCTACCAATGAAATTTATAATGTAATAGACATTGTT
CAGTCAACATGTCCATTTGAACATTTGTTATTCTTTTCCGCACCATTTGT
ACCTCCATTATTATAACGTTGTACAGAATTCCTAATTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_d06.b1 MSMg01no453_d06.b1 CHROMAT_FILE:
MSMg01no453_d06.b1 PHD_FILE: MSMg01no453_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:59 2005
         (554 letters)



>mm_chr14_49876422_49877375
          Length = 954

 Score = 1071 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttctctctctacaaagtgaacagctatcccccttaatatgtccattccttaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 attcttctctctctacaaagtgaacagctatcccccttaatatgtccattccttaccaca 874

                                                                       
Query: 61  agtcctgagctatggctccaactgtcattgactgagacctctgaacttctgaggcaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 agtcctgagctatggctccaactgtcattgactgagacctctgaacttctgaggcaagtt 814

                                                                       
Query: 121 aaccctttctccttttaaattgcttttttcgggcactttgtccagagagcagtgaaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaccctttctccttttaaattgcttttttcgggcactttgtccagagagcagtgaaaagt 754

                                                                       
Query: 181 tggtgccatgtgtgcctaaaaattatgtagtgcacccagtgcatagttggagctttatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tggtgccatgtgtgcctaaaaattatgtagtgcacccagtgcatagttggagctttatat 694

                                                                       
Query: 241 gctgggtgatatctgtagctgtcatacattttaaataactaaaagcacatgagaatgact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gctgggtgatatctgtagctgtcatacattttaaataactaaaagcacatgagaatgact 634

                                                                       
Query: 301 ttggttgtgggtatttttaaagctgaaagttgggtttatagatatgtgcatgctttgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttggttgtgggtatttttaaagctgaaagttgggtttatagatatgtgcatgctttgaag 574

                                                                       
Query: 361 taggatggtaagactgaaaatagtgtaaagcatttgaaagttctagatctaaagttctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taggatggtaagactgaaaatagtgtaaagcatttgaaagttctagatctaaagttctcc 514

                                                                       
Query: 421 caactaaggcttgcccttgtctctcctcaatgctgtctatgcccccaccctgtctacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caactaaggcttgcccttgtctctcctcaatgctgtctatgcccccaccctgtctacctg 454

                                                                       
Query: 481 tcatctatccttggctcacatgtgtttctagctagctacttcctccactctggtcttcgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcatctatccttggctcacatgtgtttctagctagctacttcctccactctggtcttcgc 394

                         
Query: 541 tgccttcctaccta 554
           ||||||||||||||
Sbjct: 393 tgccttcctaccta 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_d06.g1 MSMg01no453_d06.g1 CHROMAT_FILE:
MSMg01no453_d06.g1 PHD_FILE: MSMg01no453_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:00 2005
         (417 letters)



>mm_chr14_49712290_49713106
          Length = 817

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccgggcacagctgttgctactctgccagtctgggctcagaggcaagggaaacgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccgggcacagctgttgctactctgccagtctgggctcagaggcaagggaaacgcaca 260

                                                                       
Query: 61  ctgcttggggttgacaaaggaaacatcattaaagtgactgtttacattgtgtttattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcttggggttgacaaaggaaacatcattaaagtgactgtttacattgtgtttattgaa 320

                                                                       
Query: 121 gtgttcaaagtgtgtgtgttgcctctccaagcagcctgcagctcttcacaagattaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttcaaagtgtgtgtgttgcctctccaagcagcctgcagctcttcacaagattaacac 380

                                                                       
Query: 181 tgcatggctgatagtaaaaactagttacattgtggcttttaaacagaatagtatttttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatggctgatagtaaaaactagttacattgtggcttttaaacagaatagtatttttgc 440

                                                                       
Query: 241 ctggttttggggggtttgttgagttttggggggcgggggttgctgtacctcaagtgtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggttttggggggtttgttgagttttggggggcgggggttgctgtacctcaagtgtatt 500

                                                                       
Query: 301 ccattcaggctgagggacctttgcttactcacacacattctgtccttccacgtctttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattcaggctgagggacctttgcttactcacacacattctgtccttccacgtctttcac 560

                                                                    
Query: 361 atggctttcctctcacaaactagtaacgattttatttcttaatacaccaaaaataat 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggctttcctctcacaaactagtaacgattttatttcttaatacaccaaaaataat 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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