BAC Information

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BAC

Clone NameMSMg01-453H09
Chromosome14 (Build37)
Map Location 83,144,908 - 83,145,574
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H09.T7 (MSMg01no453_h09.b1)MSMg01-453H09.TJ (MSMg01no453_h09.g1)
ACCAG540467AG540468
length748756
length of high quality
(start - end)
667 (82 - 748)660 (81 - 740)
definitionCHROMAT_FILE: MSMg01no453_h09.b1 PHD_FILE: MSMg01no453_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:20 2005CHROMAT_FILE: MSMg01no453_h09.g1 PHD_FILE: MSMg01no453_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG
CGCGGAATTTCATTTCTTGCGACTATTTTGCTGCAGATTAGAATCTACAT
CGCTGAGATTGGCAGCACTGATGATAATGAATTTCCAGAATTCATCTACT
AACACCATTAATGATGCTGATCAACTGGCATCCATAGCAGAGATCAGGCA
TGAATACAATATAAGACTTGGGTCTTTGTGCAAACAACATGTGCTCGTGT
GTACCAGGGCCCCAGCAGGAGATTTATTCTAGGGACCCAGAGCAGATGGT
GTGGTTGCCAATTGACCTTTATGGATCTTTGTTCACTGTTTGGCTTTACT
GAAATAAATGGTGGGGGAAAAATCAGCTTTCCCAATCCAAGCTTAATCCA
CCTAAATGTCTGCTATGTAACACACAAATGTTAAAATAATTCTTATTTCC
TTCAAATTTACACTTTATAATGATGAAACACAAGTTAGCTAATATCAATA
CTTACAGAAAAACTAGTTTTGAATTTAAGTTAAATAAAATGGAATTGTGT
AACACAGTTTTTCCATTATGTAAACTGTATCTATTGTTTATGAAGCATTA
ATAATTTACAGGGACCTGTATATTAAAGAATAGATATGACTGACCACCTT
ATAGTAGTCGGTTATTTAAAGTATGTTGAATTCTTAGTGTAATTAAATGT
GAGTTTAGCCGGGTGTAGTGGCACACTCCTTTAATCCCAGCACTTGGG
NNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACAGGAACAACTAT
GGGTCAGAGATGTGATAGTGGGATGGCAACCCTATCCCTCACTTGATGTC
CTGTCTTTCTACTGGAGATGTGCTCTGTAAGTTCCCTCTCCCCACTGTTG
GGCATATCAACAAAGGTCTCTCCCTGTGAGTCCTGGGAGTCTCTCACCTC
TCAAGTCTCTGGGGCATTCTGGGAGGTTCCTTTCAACCTCCTATTTTCTC
AGGTTGCCTGTTTACATTCTTTCTTCAGGCCCTCAAAATATGCAGGGCTA
GAAAATATCACCCTGAGTGAGGTAACTCAGGCCCAAAGGACATGTATGGT
ATGTACTCACTAATAAGTGCCAAAAAATAAAAAATAAAAATAAATAAACC
AACAACAACCCATAAGGAATACACAAGATACAGTCCACAGAATTCAACAG
GCTCAACAAACCAAAGTGCCCAAGTGATGATGCTTCAGTTCCATTTGGGA
GAGAGAAGAAAACAATCACAAATGTGGAGGGAAGAAGTGACTTGAGAGGG
AAAGTAGGGGGAAGGGAGAGGGGAACCTGATCTAGTATTGGGTGAGGGAA
AAGGGCTGAAACATCAGGTTTTCATAGTCTCATAGCAAACACCCTTACTT
ATTGAGGCTTTTTCTGTTCCAGTGATGTTTAAACTTAGTTTTGAATAAGA
CAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h09.b1 MSMg01no453_h09.b1 CHROMAT_FILE:
MSMg01no453_h09.b1 PHD_FILE: MSMg01no453_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:20 2005
         (667 letters)



>mm_chr14_83144750_83145816
          Length = 1067

 Score = 1228 bits (635), Expect = 0.0
 Identities = 659/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagattagaatctacatcgctgagattggcagcactgatgataatgaatttccagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tgcagattagaatctacatcgctgagattggcagcactgatgataatgaatttccagaat 766

                                                                       
Query: 61  tcatctactaacaccattaatgatgctgatcaactggcatccatagcagagatcaggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||
Sbjct: 765 tcatctactaacaccattaatgatgctgatcaactggcatccatagcagggatcagaaat 706

                                                                       
Query: 121 gaatacaatataagacttgggtctttgtgcaaacaacatgtgctcgtgtgtaccagggcc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 705 gaatacaatataagacttgggtctttgtgcaaacaacatgtgttcgtgtgtaccagggcc 646

                                                                       
Query: 181 ccagcaggagatttattctagggacccagagcagatggtgtggttgccaattgaccttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccagcaggagatttattctagggacccagagcagatggtgtggttgccaattgaccttta 586

                                                                       
Query: 241 tggatctttgttcactgtttggctttactgaaataaatggtgggggaaaaatcagctttc 300
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tggagcattgttcactgtttggctttactgaaataaatggtgggggaaaaatcagctttc 526

                                                                       
Query: 301 ccaatccaagcttaatccacctaaatgtctgctatgtaacacacaaatgttaaaataatt 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccaatccaagcttaatccatctaaatgtctgctatgtaacacacaaatgttaaaataatt 466

                                                                       
Query: 361 cttatttccttcaaatttacactttataatgatgaaacacaagttagctaatatcaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cttatttccttcaaatttacactttataatgatgaaacacaagttagctaatatcaatac 406

                                                                       
Query: 421 ttacagaaaaactagttttgaatttaagttaaataaaatggaattgtgtaacacagtttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttacagaaaaactagttttgaatttaagttaaataaaatggaattgtgtaacacagtttt 346

                                                                       
Query: 481 tccattatgtaaactgtatctattgtttatgaagcattaataatttacagggacctgtat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 345 tccattatgtaaactgtatctattgtttatgaagcattaataatttacagtgacctgtat 286

                                                                       
Query: 541 attaaagaatagatatgactgaccaccttatagtagtcggttatttaaagtatgttgaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attaaagaatagatatgactgaccaccttatagtagtcggttatttaaagtatgttgaat 226

                                                                       
Query: 601 tcttagtgtaattaaatgtgagtttagccgggtgtagtggcacactcctttaatcccagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcttagtgtaattaaatgtgagtttagccgggtgtagtggcacactcctttaatcccagc 166

                  
Query: 661 acttggg 667
           |||||||
Sbjct: 165 acttggg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)