BAC Information

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BAC

Clone NameMSMg01-454B24
Chromosome14 (Build37)
Map Location 100,202,171 - 100,202,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454B24.T7 (MSMg01no454_b24.b1)MSMg01-454B24.TJ (MSMg01no454_b24.g1)
ACCAG540975AG540976
length776754
length of high quality
(start - end)
469 (46 - 514)455 (73 - 527)
definitionCHROMAT_FILE: MSMg01no454_b24.b1 PHD_FILE: MSMg01no454_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:13 2005CHROMAT_FILE: MSMg01no454_b24.g1 PHD_FILE: MSMg01no454_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTTGGTGAAGTAGCTGGATATAAAGTAAACTCAAACAAGT
CAATGGCCTTTCTCGATACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACACTTCTCAATAGTCAAAAATAATATAAAATATCTCGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCCAAGATGGAAAGATCTCCCCAGCT
CATGGATTGGCAGGATCAAAATTGTAAAATGGGTAACTTGGCCAAAGCAA
TCCCCGAATTCATTGGGATCCCCCCCAAAATTCCAATTCAATTCTTCCCC
AAATAAAAAGGAAGAATTTGGCAAATTCCCCTGGGAAAAACAAAAACCCT
GGGAAGAGCCAAACCCTTTCCCCAGG
GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGTTAATTTCGTCAACAGTAAGAACA
TGTGTCAAAATTGAAAGAAAAAAAAAAAAGAAGGAAGGAAGGAAAGATAA
AGACAAAAAGAAAGACTTTTAATCTGAAATAAGGTTTCCTAATAAAATTG
ATATTCGGTTTGTTCATATGTTAAGATTCTGAGCTTCATCTTTGTTCCTC
CTGACTTCATCCCTAACTTCAAAGGTACTAGGGACAAACTGTACAATCAA
CAAATACATATAAACTTACAGAATTAAGTGATTAAAAACCTTGACCTACA
CCAATCTGGATACTTGTTACTATCATTAAAGATTTAATAAGGAGAGATAT
TTTAAACGCATAGTCACACTAATAACTCATGACTTAATTTATCCATGACT
TTCATCTTCACCCATAATTAAGGACTGCTGAGGTCATATTCTGTAATAAT
AGCTCTGTTCGTACGTATCTCACTTTCAACCCTAAAGACAACATCTCTCT
GGATCCTTACAACCACCATGAGCAGGGCGCTATTATCCTTCCTATGCAGA
TTATGGCATCGGGGTTAAATGAATCTCTGAGAACAAGCTCCTCCTCCTTT
GGTGGTTCCCCATGAGGTAAGGCGGCCACGGTTTCTGGGGCCCCCTAAAA
AAAAAGGGCCTTTCTTTTTTTGTTTCGGGGAAAATAGTGGGGAGATATGC
CCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_b24.g1 MSMg01no454_b24.g1 CHROMAT_FILE:
MSMg01no454_b24.g1 PHD_FILE: MSMg01no454_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:13 2005
         (455 letters)



>mm_chr14_100201878_100202732
          Length = 855

 Score =  822 bits (425), Expect = 0.0
 Identities = 446/455 (98%), Gaps = 4/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagttaatttcgtcaacagtaagaacatgtgtcaaaattgaaagaaaaaaaaaaaagaa 60
           ||||| || ||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 744 caagtcaacttcgtcaacagtaagaacatgtgtcaaaattgaaag----aaaaaaaagaa 689

                                                                       
Query: 61  ggaaggaaggaaagataaagacaaaaagaaagacttttaatctgaaataaggtttcctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggaaggaaggaaagataaagacaaaaagaaagacttttaatctgaaataaggtttcctaa 629

                                                                       
Query: 121 taaaattgatattcggtttgttcatatgttaagattctgagcttcatctttgttcctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taaaattgatattcggtttgttcatatgttaagattctgagcttcatctttgttcctcct 569

                                                                       
Query: 181 gacttcatccctaacttcaaaggtactagggacaaactgtacaatcaacaaatacatata 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gacttcaaccctaacttcaaaggtactagggacaaactgtacaatcaacaaatacatata 509

                                                                       
Query: 241 aacttacagaattaagtgattaaaaaccttgacctacaccaatctggatacttgttacta 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 508 aacttacagaattaagtgattaaaaaccttgacctacaccaatctggacacttgttacta 449

                                                                       
Query: 301 tcattaaagatttaataaggagagatattttaaacgcatagtcacactaataactcatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcattaaagatttaataaggagagatattttaaacgcatagtcacactaataactcatga 389

                                                                       
Query: 361 cttaatttatccatgactttcatcttcacccataattaaggactgctgaggtcatattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttaatttatccatgactttcatcttcacccataattaaggactgctgaggtcatattct 329

                                              
Query: 421 gtaataatagctctgttcgtacgtatctcactttc 455
           ||||||||||||||||| |||||||||||||||||
Sbjct: 328 gtaataatagctctgttagtacgtatctcactttc 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)