BAC Information

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BAC

Clone NameMSMg01-454E17
Chromosome14 (Build37)
Map Location 75,161,691 - 75,162,122
singlet/doubletsinglet
Overlap geneLrch1
Upstream geneLOC100043734, EG629578, LOC629583, Htr2a, LOC668508, Esd
Downstream geneENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454E17.T7 (MSMg01no454_e17.b1)MSMg01-454E17.TJ (MSMg01no454_e17.g1)
ACCAG541105AG541106
length777767
length of high quality
(start - end)
512 (41 - 552)428 (67 - 494)
definitionCHROMAT_FILE: MSMg01no454_e17.b1 PHD_FILE: MSMg01no454_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:26 2005CHROMAT_FILE: MSMg01no454_e17.g1 PHD_FILE: MSMg01no454_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCGGAATTCT
TTGTTTTGCTCTGAGCCCCATTTTTAATTGGGCTATTTGATTTTATGGAG
TCCACCTTCTTGAGTTCTTTAAATATATTGGATATTAGTCCGCTATCCGA
TTTGGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCCTTTTGTCT
TATTGACGGTGCCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCC
CATTTATTGATTCTCGATCTTACAGCACAAGCCACTGCTGTTCTATTCAG
GAATTTTTCCCCTGTATCCATATCTTCGAGGCTTTTCCCTACTTTCTCCT
CTACAGCCAGTGTGTGGATACTTTTAGAGATAATATAAGCATAAACACAT
GAATACAAAAAAATCAACAAGACAATGGAGTAGAGGACATAAAGAATAAA
GCCAAGAGGTGGTTGCAGCACACACCTTTTGGGAGGCAAAGGCAGATGGA
TCTCTGTGTTTGAGGCCAGCCTGATCTACAAGGAAAGTTCCAGGACAGCT
GGGATTACACATAGAAACCCTGTCTCACAAACAAAACAGAAAACAAAACN
GAGACAAAGACNGACCGACCGACNGACGGACCGACAGACCGACCTAAGGT
TTAGTAATAAGAGAGATAATTTTACAGACACCTTTTTTTAAAAGGTTATA
TAAATTTGCCCCGGGGCTCCAGGGTTCTGACCCCCCTTTGAGACTTTTTA
TGAAGGGAAGAAATAATTCTGTTATAA
TGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTCGCGAAATTCACATCAGTCCCAGTATGAGTTAAAATTTTAGG
AGTTTGAGGCAGGTAGAGTGTTTATAGTTTAGGTAAAAACGTTTGGGTGC
TGAGAAGTGCACCCAGGGCCTTGGCTTTGTGTCTCCATCTCCTGAAGAAT
AATTTAATATAATCATCTTTCACGGGCTTTGGTTTTAAAGGCTAGGTTTG
AGACTTCAAAATTACAACAGGCAACCCTTTGGGTAGGGGTTCCGTGCAAT
CTACTTTCCTTTTTGTCTCTTGGCTTTTCCAGCAGTGTTGTTCATTCTTG
GTCCATTCAGTTATTCCTCATGTATTGAATGTGCGCTGTGTACTGGCCCT
ATGGGAGGTGCTGCAGATAAAATAGTGTTCAAGATCCAGGTCCCCATCCT
CCGAAAGTTTGTAGTCCAGACCAGGTGTCAGCATACTTTATGATTTTTAG
GATGATGGTCTCTGTTGCAACCAACCATCTTGTCATTTAAGCACCGATGC
CACCCTACAGGATATATGAACCAGGCAGCTGGCTTGAGTGTCCATAAAAT
CTTTTCTCATACAATAAAGAAGTACTCGTATGGGCTTGAAAGTCTTTTTT
TTTAACTCTCCCCAAAGGCTCTTTTAAATTTAAAAAGATTCTCCTCTTTA
TCCTCTCAACTCGTTTTTTTTACTTTTCCACTTCCTATTATAAGTTGCTG
CCTCCTTCCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_e17.g1 MSMg01no454_e17.g1 CHROMAT_FILE:
MSMg01no454_e17.g1 PHD_FILE: MSMg01no454_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:26 2005
         (428 letters)



>mm_chr14_75161633_75162464
          Length = 832

 Score =  737 bits (381), Expect = 0.0
 Identities = 418/433 (96%), Gaps = 6/433 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacatcagtcccagtatgagttaaaattttaggagtttgaggcaggtagagtgtttata 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 490 tcacatcagtcccagtatgagttaaaattttaggagtctgaggcaggtaaagtgtttata 431

                                                                       
Query: 61  gtttaggtaaaaacgtttgggtgctgagaagtgcacccagggccttggctttgtgtctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtttaggtaaaaacgtttgggtgctgagaagtgcacccagggccttggctttgtgtctcc 371

                                                                       
Query: 121 atctcctgaagaataatttaatataatcatctttcacgggctttggttttaaaggctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atctcctgaagaataatttaatataatcatctttcacgggctttggttttaaaggctagg 311

                                                                       
Query: 181 tttgagacttcaaaatta-----caacaggcaaccctttgggtaggggttccgtgcaatc 235
           ||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||
Sbjct: 310 tttgagacttcaaaattacctttcaacaggcaaccctttgggtagggggtccgtgcaatc 251

                                                                       
Query: 236 tactttcctttttgtctcttggcttttccagcagtgttgttcattcttggtccattcagt 295
           ||||||||||  || | ||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 250 tactttccttcctg-cccttggcttttccagcagtgttgttcatacttggttcattcagt 192

                                                                       
Query: 296 tattcctcatgtattgaatgtgcgctgtgtactggccctatgggaggtgctgcagataaa 355
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tattcctcatgtattgaacgtgcgctgtgtactggccctatgggaggtgctgcagataaa 132

                                                                       
Query: 356 atagtgttcaagatccaggtccccatcctccgaaagtttgtagtccagaccaggtgtcag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atagtgttcaagatccaggtccccatcctccgaaagtttgtagtccagaccaggtgtcag 72

                        
Query: 416 catactttatgat 428
           |||||||||||||
Sbjct: 71  catactttatgat 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 832
Length adjustment: 9
Effective length of query: 419
Effective length of database: 823
Effective search space:   344837
Effective search space used:   344837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)