BAC Information

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BAC

Clone NameMSMg01-454F11
Chromosome14 (Build37)
Map Location 114,559,878 - 114,560,117
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454F11.T7 (MSMg01no454_f11.b1)MSMg01-454F11.TJ (MSMg01no454_f11.g1)
ACCAG541140AG541141
length758768
length of high quality
(start - end)
500 (74 - 573)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no454_f11.b1 PHD_FILE: MSMg01no454_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:30 2005CHROMAT_FILE: MSMg01no454_f11.g1 PHD_FILE: MSMg01no454_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGCGGA
ATTCTTTGTTCGCTCAAATACCTCATTTTTTAATGGGGTTATTTGATTTT
CTGGGGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGATGGTATCTTTTGCCTTGCAGAAGCTTTTCAACTTTATG
AAGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTTTTCTGTACCCATATCTTCGAGGCTTTTCCCTACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTCAATC
CACTTAGATTTGACCGTAGTGCAAGGAGATAGGAATGGATCAATTCACAT
TCTTCTACATGATAACTGCCAGCTGTGCCAGCACAATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTTGCTCCCGTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGATTCATCTCAGGGTCTTCAATTCTGTTACATTGGTC
TACTTGCCTGTTGTTATACCAGTACCATGCAGGTTTTATTACAATTGTTC
TGTAATACAGCTTTACGCCAGGCCTAATGAGTTCCTCCCAAGATTTTTTT
ATCCTTGAAAAAAAGTTTTTTTTTTCTCCCGTTTTTTGTTTGTTCCTAAC
TAATTTGT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTACCAGCAAAATTCAAATCAAACCTAAAAATTGCTAACAGC
ATTTGTGATTCAACTATCTACAATAGGAAAACAATTATAATGTGAAATAT
TTCTGGTTAAGAAAGTATAAATTATGATAAATGCCTTGCTTATGTGTGAT
ATTGTCTTGCTTCTAGAAAAAATGTTCTTTAGTAACTTTGTTCTACCTAC
ATCTGAATAACACAGGAAAATTACATTTGATGTCACAAAACATCAATAAT
ATTCAGACCAAATCAAATAGNACCTTGTGAAACTTATAACTAACATATAG
AACCATGTATAGGCAATAAATTAGAGGTGCTCACCATAAAAATTCATGCA
TATGTATATAAATAATATATATATGTATATATATGATAGATATATAGATG
TAAATAATTAAATGTAATTTAAAGTATACACANCAATACACANCATTGTT
GAACGACAGTGAGATTATTTTCCAACTATTTTATCATTAATGAAAGATTT
TCCTCCCCAGGAAGTAAGTATTGAAGCTCCCTTGTTTTCCTTTACACCTA
ATGAGGAATGTATTACATTTCCATTGGTTCTTTTTTACTCCCTCGTTTTT
TTTTTTTTCTCCTCACATCTTCCCTTCTTTTCCCAACTATTTTTTCCCCC
TTCTCTCCCCCCTATTTCCCCCCCCTCGCCCCTTCCCATTTTTCCCCCCC
CTTATTCTTTTTATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_f11.g1 MSMg01no454_f11.g1 CHROMAT_FILE:
MSMg01no454_f11.g1 PHD_FILE: MSMg01no454_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:30 2005
         (243 letters)



>mm_chr14_114559678_114560319
          Length = 642

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaatcaaacctaaaaattgctaacagcatttgtgattcaactatctacaataggaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaatcaaacctaaaaattgctaacagcatttgtgattcaactatctacaataggaaaa 260

                                                                       
Query: 61  caattataatgtgaaatatttctggttaagaaagtataaattatgataaatgccttgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattataatgtgaaatatttctggttaagaaagtataaattatgataaatgccttgctt 320

                                                                       
Query: 121 atgtgtgatattgtcttgcttctagaaaaaatgttctttagtaactttgttctacctaca 180
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 321 atgtgtgatattgtcttgcttctagaaaaa-tgttctttagtaacttcgttctacctaca 379

                                                                       
Query: 181 tctgaataacacaggaaaattacatttgatgtcacaaaacatcaataatattcagaccaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 tctgaataacacaggaaaattacatttgatgtcacaaaaaatcaataatattcagaccaa 439

            
Query: 241 a 241
           |
Sbjct: 440 a 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space:   148122
Effective search space used:   148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)