Query= MSMg01no454_l24.b1 MSMg01no454_l24.b1 CHROMAT_FILE:
MSMg01no454_l24.b1 PHD_FILE: MSMg01no454_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:03 2005
(244 letters)
>mm_chr14_33959667_33960311
Length = 645
Score = 427 bits (221), Expect = e-124
Identities = 239/245 (97%), Gaps = 1/245 (0%)
Strand = Plus / Plus
Query: 1 acttgataagggtttagcctctgttaagcaatatttcctccacttgccacacaaaatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgataagggtttagcctctgttaagcaatatttcctccacttgccacacaaaatgag 260
Query: 61 ctttttt-tgtgcaaagctgaaattgcacaggtggaaagtagattaagggaagatctaat 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttttgtgtgcaaagctgaaattgcacaggtggaaagtagattaagggaagatctaat 320
Query: 120 atccacaggtctaggtaatgtctccaaaggtcagaagcatcagaccttatgacaaatgct 179
|||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 atccacgggtctaggtcatgtctccaaaggtcagaagcatcagaccttgtgacaaatgca 380
Query: 180 tatggactcagagaccagcatagcctggtcaggacatcatactggctctccagttacctg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggactcagagaccagcatagcctggtcaggacatcatactggctctccagttacctg 440
Query: 240 gagac 244
|||||
Sbjct: 441 gagac 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_l24.g1 MSMg01no454_l24.g1 CHROMAT_FILE:
MSMg01no454_l24.g1 PHD_FILE: MSMg01no454_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:03 2005
(418 letters)
>mm_chr14_34115434_34116252
Length = 819
Score = 603 bits (312), Expect = e-177
Identities = 395/440 (89%), Gaps = 31/440 (7%)
Strand = Plus / Minus
Query: 1 tctctgcacagggatgtgcagtgcttggagcacaagggggtccctta-ccacctcttctg 59
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 449 tctctgcacagggatgtgcagtgcttggagcacaagggggtcccttacccacctcttctg 390
Query: 60 cttttccagagtggcctcagtaccaacctgcttcctcctgaggtcctaggaggagctgtg 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttttccagagtgacctcagtaccaacctgcttcctcctgaggtcctaggaggagctgtg 330
Query: 120 tataacaaaagcagtaacagcagatatgagcagatctgagagccccacaaattgggtgct 179
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 329 tataacagaagcagtaacagcagaaatgagcagatctgagagccccacaaattgggtgct 270
Query: 180 cagccaggcaatcgtttctgtgctgggaaaaaagtcggagaccaagccctcaaacctcac 239
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct: 269 cagccaggcaatcgtttctgtgctgggaaaggggtcagagaccaagcccttaaacctcac 210
Query: 240 agctgaagctc---------------------ttgcgtgtacacacacacgcacatgcac 278
||||||||| | | |||||||||| |||| |||
Sbjct: 209 agctgaagcacacacacacacacacacacaca---c----acacacacacacaca--cac 159
Query: 279 acgcacacacacacacattgtggagtgttaaaagaaacaatcagttccagaaggctctgc 338
|| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 158 acacacacacacacacattgtggagtgttaaaagaaacagtcaggtccagaaggctctgc 99
Query: 339 cctcacaatgaaccagcccactcgtgaatcatctgtcataagagctactttggtctgcat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 98 cctcacaatgaaccagcccactcgtgaatcatctgtcataagagctactttggcctgcat 39
Query: 399 cttcttgcaccgcttttggc 418
||||||||||||||||||||
Sbjct: 38 cttcttgcaccgcttttggc 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space: 331290
Effective search space used: 331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
