BAC Information

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BAC

Clone NameMSMg01-455A07
Chromosome14 (Build37)
Map Location 74,036,407 - 74,036,599
singlet/doubletsinglet
Overlap genenone
Upstream geneFndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2
Downstream geneLOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A07.T7 (MSMg01no455_a07.b1)MSMg01-455A07.TJ (MSMg01no455_a07.g1)
ACCAG541657AG541658
length720729
length of high quality
(start - end)
193 (324 - 516)495 (80 - 574)
definitionCHROMAT_FILE: MSMg01no455_a07.b1 PHD_FILE: MSMg01no455_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:24 2005CHROMAT_FILE: MSMg01no455_a07.g1 PHD_FILE: MSMg01no455_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCC
GCGGAATTCATTTATACTTCATACTCCCCCCTCCCAATTTCTTGTTTCCT
TCATCTTCCCCCTCCATAAGATTCCTGCCTATCTCCCTGATGTCTTTTAA
TGTATTTAACCTTGCTTCTCCTTGATATTTTTTCTCTGCCAGTCTCTTCC
CTTTGTCCCATTCACTATTTCAACACTTAACCCTAAATAATTTTAATTTC
TTAGCACATTATGCAATAATTCACACAAGTTTACCACTTTCACTTCAACT
GTCACTGGTGATATTTCTTTTTTTGCAATTAATCTGAAGAGTATTTCTAT
ATCATGTATGATTTGATACTGATACTGTAACAGCAGACTTATTTTTCCTT
ATCACTGAAAGATAGTTCATATTGAACCTTGAACTGTAAGATATTAAGAT
ATTATAAAGCCATTTTTTAAAAAACACATATCTAAACCAACAACATAAGC
ACAAATCACAACACAGAAATGCAAGAAACAAGCAAAATAAAGCAACATGA
CTCCTCCATTAACTACTTCATTCATGATGCTAAGAGGCAAAATGGCCAAT
AACGATTTCTTTAAAGGCTTTTCTGGCATAATTGACTAATGTACTTTTTA
GCAGATTAATCCCAAACAAGTCGAATAAACAGAATGAACCAATGTTGCCA
AAGAAAATTTTGGTTAATTA
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTAATAAAATAGCCATAA
GAGGCAGATGAAGGGAGGGAACTGGGAGGGAGGAGGGATGCGGACAGGAA
GGGGGGTTCAGGATCAGGTGTGGGGAAGGACAGAGAGATGGCCAGATGAC
CATAAAATGAATGGAAATCTGCAACTGATGGGGATAAGGAGGTGGGGGGC
ATCTCCAGGATGAGACAGAGACCTGGGATGAGGGACATGCCTAAGAATCA
GTGGGGGTGACCTTATTTGTGACTCACTACATTGCGGATATGAAATCCAA
AGAGGCCACCCTATGTAGCCAGGCAGTAACCCCAGTGACACTAATCCACC
CACAACACTTTCAACCCAAAATTTATTCTGTCTACAACAAATGCAGGCAA
GGGGGATGGAGCAGTGACTGAGGGAATGGCCAACCAATGACCGAGTACGT
GACTTTTATTGGGGCGATGGGGCCATGCACACGTGTACATGGGACGGGGG
TGACAGCTAGTGATGACGTCTTGTCTCGGGGGGCCCTAGAAAGCTGGCTG
CAAATAGATGCCTGTTTGTCTCGGAGTCCCTCTCAACTGTCTATGGTTGT
GCCTGATTGGTAACACTCTGGACCTTGACCAGTTGTGGCTTCCGCGGCTA
AGCTCTTCCCCGGTTCCCTCCGAAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a07.b1 MSMg01no455_a07.b1 CHROMAT_FILE:
MSMg01no455_a07.b1 PHD_FILE: MSMg01no455_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:24 2005
         (193 letters)



>mm_chr14_74036207_74036799
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaattaatctgaagagtatttctatatcatgtatgatttgatactgatactgtaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgcaattaatctgaagagtatttctatatcatgtatgatttgatactgatactgtaacag 334

                                                                       
Query: 61  cagacttatttttccttatcactgaaagatagttcatattgaaccttgaactgtaagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagacttatttttccttatcactgaaagatagttcatattgaaccttgaactgtaagata 274

                                                                       
Query: 121 ttaagatattataaagccattttttaaaaaacacatatctaaaccaacaacataagcaca 180
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 273 ctaagatattataaagccatttttaaaaaaacacatatctaaaccaacaacataagcaca 214

                        
Query: 181 aatcacaacacag 193
           |||||||||||||
Sbjct: 213 aatcacaacacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)