BAC Information

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BAC

Clone NameMSMg01-455B23
Chromosome14 (Build37)
Map Location 77,157,551 - 77,316,813
singlet/doubletdoublet
Overlap geneLOC100043753
Upstream geneSlc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
Downstream geneLOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455B23.T7 (MSMg01no455_b23.b1)MSMg01-455B23.TJ (MSMg01no455_b23.g1)
ACCAG541737AG541738
length714758
length of high quality
(start - end)
256 (326 - 581)194 (80 - 273)
definitionCHROMAT_FILE: MSMg01no455_b23.b1 PHD_FILE: MSMg01no455_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:32 2005CHROMAT_FILE: MSMg01no455_b23.g1 PHD_FILE: MSMg01no455_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,157,551 - 77,157,806)(77,316,620 - 77,316,813)
sequence
NTTTCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGC
CGCGGAATTCACTAATAGCATGAGGGCAGAGGTCACTGGAGGATGGCTTT
CTTTTAGACTGAAGTCCTTATGTCCTTGTTTAACGTGTGACTTGGTTTAT
GTGGGCTAAACCTGTACACGGGAAGTGAAAATGTAAATAGGAACCCACTT
CGGTTCCACTTTGGGAAATGCCATTTAAGGAAACTTTATGACATTGCGTT
TTTGTCCAAAGCCTAGGGATAATGTGTGATAGCATCTAGACGGGCAAACT
CAGGCCAGAGTACCTTCAATANATTGGTTCTCAGACAGCTATGCTGTGAT
ATGTGGTCAGTAGGCCTCTTGTGAGCTGTGATGCTCAGCCTCTCAGTCCT
CAGAGGACCAAGTAGTGTCCTGGCCCAAAGAAGCACCTTCCTTTGGATAA
ACTCATGTGGCCTATTTTTGTGTAATGTGGGTGGCTGTTACTTAACCTTT
CTTCTTCTTTTTCTTCAACAATAGTGGCTTTAACTACTTTTAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTTTAATTTTCATTTTCC
TTTATTTTTTTTTATTCTTTCCTCATTCAAAATATATTTTTTTTTTTTTT
TTCTCTTTTTTTATAATTTTTCTCTTTTTACTTCCTTTTCTTTTTTTTTT
GTTTTCTCTTCCTT
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAGTGAGCTTAACTGAT
GGGACAATTTCTTTTAGATAAGGTCTACAATGTAAAACAACTATGTTGCT
CATGTGAATTAGTGTTGTGGTGGTTTTTGTTTTGTATTTAATTTACTGGT
CAGTGTTTTCTAATCAGTGAGTTAATGTGGGCTTCCTTATCTCAATCAGT
ACTGCCCATTTGTTAGGTCAATAGAGGAGGCATGGACTGCATTCCCCAGG
TATGGCCCCAACTAAAAGTTTACCCCTTGGATCCGTATGGACTGCTGCTA
GGTGTTTTCTCTTGCCTCCTGTTTGATGACAAATATCTGATACAACTCCA
GACGAATCTTTATTTTTGGCCCACACATTCTGATGTTTTGTTGTATGACC
TTGATTGATTCATTGTTTTGCTTTCCCTGCATTCAATGCCTTTTTACTCA
CTTTGTCTGTTTTTTCTCTTCCTGATCATTTTTGTACTCATTTTATTTTT
CTTTTTCTTATCTCCTCCTTTTCTTTGTTTGCCCTTCTTGTCTAACCCTG
CCTATCCTTTTTTACCCCCCTTTTTTTATTATTTTTCCCACCCCCTTCTT
ATCTTTTTTTTTTCCCTGTCATTTTATTTCCTATTTTTCTTCTCTCTCTT
TTTTTCTTTTTCTTCCTCTCTTTCTTTTTTTTATTTTTTTCTTTTTTTTC
TATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_b23.b1 MSMg01no455_b23.b1 CHROMAT_FILE:
MSMg01no455_b23.b1 PHD_FILE: MSMg01no455_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:32 2005
         (256 letters)



>mm_chr14_77157351_77158006
          Length = 656

 Score =  472 bits (244), Expect = e-137
 Identities = 253/256 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttctcagacagctatgctgtgatatgtggtcagtaggcctcttgtgagctgtgatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttctcagacagctatgctgtgatatgtggtcagtaggcctcttgtgagctgtgatgct 260

                                                                       
Query: 61  cagcctctcagtcctcagaggaccaagtagtgtcctggcccaaagaagcaccttcctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcctctcagtcctcagaggaccaagtagtgtcctggcccaaagaagcaccttcctttg 320

                                                                       
Query: 121 gataaactcatgtggcctatttttgtgtaatgtgggtggctgttacttaacctttcttct 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 321 gataaactcatgtggcctatttttatgtaatgtgggtggctgttacttaacatttcttct 380

                                                                       
Query: 181 tctttttcttcaacaatagtggctttaactacttttagtgtgtgtgtgtgtgtgtgtgtg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttttcttcaacaatagtggctttaactacttttagtgtgtgtgtgtgtgtgtgtgtg 440

                           
Query: 241 tgtgtgtgtgtgtgtg 256
           ||||||||||||||||
Sbjct: 441 tgtgtgtgtgtgtgtg 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no455_b23.g1 MSMg01no455_b23.g1 CHROMAT_FILE:
MSMg01no455_b23.g1 PHD_FILE: MSMg01no455_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:32 2005
         (194 letters)



>mm_chr14_77316420_77317013
          Length = 594

 Score =  329 bits (170), Expect = 8e-95
 Identities = 188/194 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaagtgagcttaactgatgggacaatttcttttagataaggtctacaatgtaaaaca 60
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 394 ataaaagtgagcttaattgatgggaaaatttcttttagataaggtctacaatgtaaaaca 335

                                                                       
Query: 61  actatgttgctcatgtgaattagtgttgtggtggtttttgttttgtatttaatttactgg 120
           ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 334 actatgttgctcatgggaattagagttgtggtggttgttgttttgtatttaatttactgg 275

                                                                       
Query: 121 tcagtgttttctaatcagtgagttaatgtgggcttccttatctcaatcagtactgcccat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 274 tcagtgttttctaatcagtgagttaatgtgggcctccttatctcaatcagtactgcccat 215

                         
Query: 181 ttgttaggtcaata 194
           ||||||||||||||
Sbjct: 214 ttgttaggtcaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)