BAC Information

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BAC

Clone NameMSMg01-455F03
Chromosome14 (Build37)
Map Location 49,313,791 - 49,314,192
singlet/doubletsinglet
Overlap genenone
Upstream geneKtn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2
Downstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455F03.T7 (MSMg01no455_f03.b1)MSMg01-455F03.TJ (MSMg01no455_f03.g1)
ACCAG541888AG541889
length842742
length of high quality
(start - end)
---402 (76 - 477)
definitionCHROMAT_FILE: MSMg01no455_f03.b1 PHD_FILE: MSMg01no455_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:48 2005CHROMAT_FILE: MSMg01no455_f03.g1 PHD_FILE: MSMg01no455_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTCTTTGCGCCCGCTATTCGACTCCCTTTCTCCACAGGATCCGCNGG
ATTCCTGGATACCCCAGGTTACACAGAGAAACCCTATCTTGAAAACCCAG
AACAACAGCATGCTCACAACGCACCATAGCTACAACGATAGGACCTACAG
TATTAGGAATACCATCAAGAGCATGCCTACTTTTTTCTTCTTTTCCTCTT
TTCCTCCCTTCTCTTCCTTCTTTTTTCCCTCTCTCTCTTCTCTTTCTCTT
TTTTTTTTCCTCTCACTCTCTGCTGTCTCTCTCTTTTTTCTTCCCTGCCC
CCCCTTTCTCCCCTCTTTTTTTTTTCTCCTTTTCTCCTTTCCTCCCCCCC
CCTCTTTTTCTTTTTTTTTTCTCCTGCCTTTTCTTCTTTTCCTCCTTTCT
CTTTCCCCCCTCTTCTCCCCTTTTCCCCCTTTCTCTTTTTTCCTTTTTCT
TTTTTTTTTTTTCCTCCTTTTTTTTTCCTTCCCTTTTCCTTTTTCTTTTT
CTTTTCCTCTTTTTTCCTCTTCCCCCTTTTTTTCTCCTTCTTCTTTCTTT
TTTTTTTCTTCTTTTTCCCTTCTTTTCCCTTTCTCTTTTCTTCCCTTTTT
CTTTCTTTCTTTTCTTCTCCTTCTCTCTTTTTCTCTCTCTTTCTTTTTCT
CTTCCTTCTTCTTTCTCCTTTTCTTCTCCTTTCCCTCTTTCCTCTTTCTC
CTCTTTCCCCTCTTCCTCCCTTTCTCCCTCCCTTTTCCCTTTTTTCCTCT
TCTCCTATCCCTTTTCTTTTTTCCCTTTTTCTTTCTTCTTTTTTCCTCCC
TCCTTCNCCCCTCTATCTTTTGCTCTTTCCTCCTTCCCTCTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAGCAGGAGTTGGACTGCAGG
AGTAGATGTTAATCAAAGGTGCAGGTTTTTTGTTATGAGCTGATTAAATT
CTGAAGGCTTAATGTGAAGTGTGATATCTATTCCTAGATGTCAACTTCTC
TCTATATAGAATCAAGTGGAATTAATTAATTCCATATATACACCCGTGAG
GGATTTTTTTTTTCTTGGCTTGAAGTGTGTGGATTCACTTTTAGCCTAGA
ACATGTATACATATAAAATAAGATAATGATAGTAATAATAATAATACTAC
TACTAATAATAAAAATGATAAAGAGTTCAAAAACTGCTTGGACCAAATAA
GACCCTGTCTAAAACAAACAAAAAAAGAAACTAGACTTTAAAAATGAGCA
TTATTTGATTACTGAAGGATGATGGTGGGGAAAGTTTAAATCCTGAAGCA
GGAGAGCATAGTACTACAAAGGAATAGATGCCAGAGCATAGAACTTATGT
TCTAGTTCTTGGAAGAGCATCCGATCCCATCTCTTGGCAGTGTGTTACAC
AAACACTTCCTTGAGATTTTGCTATCTGATCATTGGACGACCCACACATT
TGCATTTTTATCACTACCTTTGTATTTAATTTCTAAAACCCATTAATGTA
TCCTTCTTAACATTAACTAGATCTAAATCTACTACCTACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_f03.g1 MSMg01no455_f03.g1 CHROMAT_FILE:
MSMg01no455_f03.g1 PHD_FILE: MSMg01no455_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:48 2005
         (402 letters)



>mm_chr14_49313591_49314392
          Length = 802

 Score =  777 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaagcaggagttggactgcaggagtagatgttaatcaaaggtgcaggttttttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaagcaggagttggactgcaggagtagatgttaatcaaaggtgcaggttttttgtta 260

                                                                       
Query: 61  tgagctgattaaattctgaaggcttaatgtgaagtgtgatatctattcctagatgtcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagctgattaaattctgaaggcttaatgtgaagtgtgatatctattcctagatgtcaac 320

                                                                       
Query: 121 ttctctctatatagaatcaagtggaattaattaattccatatatacacccgtgagggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctctatatagaatcaagtggaattaattaattccatatatacacccgtgagggatt 380

                                                                       
Query: 181 ttttttttcttggcttgaagtgtgtggattcacttttagcctagaacatgtatacatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttcttggcttgaagtgtgtggattcacttttagcctagaacatgtatacatata 440

                                                                       
Query: 241 aaataagataatgatagtaataataataatactactactaataataaaaatgataaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataagataatgatagtaataataataatactactactaataataaaaatgataaagag 500

                                                                       
Query: 301 ttcaaaaactgcttggaccaaataagaccctgtctaaaacaaacaaaaaaagaaactaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaaaactgcttggaccaaataagaccctgtctaaaacaaacaaaaaaagaaactaga 560

                                                     
Query: 361 ctttaaaaatgagcattatttgattactgaaggatgatggtg 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttaaaaatgagcattatttgattactgaaggatgatggtg 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)