BAC Information

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BAC

Clone NameMSMg01-455G22
Chromosome14 (Build37)
Map Location 106,386,256 - 106,386,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2
Downstream geneEG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455G22.T7 (MSMg01no455_g22.b1)MSMg01-455G22.TJ (MSMg01no455_g22.g1)
ACCAG541973AG541974
length730733
length of high quality
(start - end)
513 (71 - 583)478 (74 - 551)
definitionCHROMAT_FILE: MSMg01no455_g22.b1 PHD_FILE: MSMg01no455_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:56 2005CHROMAT_FILE: MSMg01no455_g22.g1 PHD_FILE: MSMg01no455_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCAGTTCCAGCCATGTGGCTGTGGCTGTAGAGTCAAGAAT
GGAAGGAACTACTTGGACAATTGATGCTGGTTAGCTGGAGCTAAGACATT
AGCAATGATTAAGACGAGACCACCATCACTGAGTTGAAATCTGGGAGTTG
TTTTCTGGGAGCACAAAGAAGCTGTGTTCCAGAGATAGAAAAGGTAGTAG
CTCGTACTGCAGCTGGACTTGGTAACATGTACGAGTCACCCAGGTGGTAC
TGGTTTTGAAGGCATGATTGTGTCATGAAGAAGAACTGAGGCTTGGCAAT
GTGAGAGGTCATGGAAGGCCATTGGAGAATGTGTAGCCTCAGCTATAGTT
GATGGCCCAGGACTGAAGAGGTTAGGCAAAAGATTTGATGCTTGGCACCA
TGAAGAGAGCCTATGAGAGGCTATTGGTGAAGCCTAGTTGAAGTGGAACA
CCCCAGTGTATTGGAGATGTCAGTACCATGGGATGATCACCAAGAACAGC
AGCCATAGTGGAGTGAATCAACCTGAGCTTAGAGTGCTACAGGGGGCAGG
TCTGGAGAAGTGATGCCAGCCCCTTAGGAGGAGTCCAAAAGATCAAGTGG
AATCCCAGACACTGAAACAAGAAGCTGTGACTTTGAAATTTGCCTTGGAG
ACTCCAAGATGTTAATGATGGCAGAGCCCG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTGATCTGATCTTTAGCGCTATCGT
CTTCGGCTTCCTGGATCTTTAGGAAGTGCTGTGTGGTAGGGCTGGAGATA
ACAATGCAGCCTACAATGCTGTGAGAGCTCACACGGTATAAGAATGTGAC
CCAGAGAAGAACAACGGAGTGAAAACATCAAATTAAAATAAACAAATTGA
AATTGAAAGTTTCTGACCTCGAAGGTAACAGATTGGAGAGAGGAGGCTGA
AGAAAGTAAGAAAATTTCCTCAAGCTTTATAATTTACAAAATTTGGGGAA
AATAATTTTTCTTTAAACCTTTTTTTTTCCCTTCTATGCTTAATACATGT
GTGTTGGGAAGAAAGTGTCTATTTTAAAATAGTTACAGCCTTCAAGTAGA
TCTCAACAAATATTCTTCAGCCAAATAAAATTAATTTCGAAATGACCTCT
AAACACATGAAGTTGGGGAATCACACAATCTGATAGGCACTATTGACTTC
TTTGGCTCCACCTGTGTTCAGCTGTGCTCCAACTGTGAAGAGAGACCACA
GCCAAGGCAACTCTTACAAAATACCGCATTTAACTGGGGCTTTGCTAACG
GTTTTGGAGGTTTAGCCCCTGAACTTTTTGTTGGGAAGTTTGAACCCCCG
CTTCTGGAAAAACAGTAATTTAAAATCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_g22.g1 MSMg01no455_g22.g1 CHROMAT_FILE:
MSMg01no455_g22.g1 PHD_FILE: MSMg01no455_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:56 2005
         (478 letters)



>mm_chr14_106386046_106386923
          Length = 878

 Score =  774 bits (400), Expect = 0.0
 Identities = 454/486 (93%), Gaps = 26/486 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgatctgatctttagcgctatcgtcttcggcttcctggatctttaggaagtgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aattgatctgatctttagcgctatcgtcttcggcttcctggatctttaggaagtgctgtg 270

                                                                       
Query: 61  tggtagggctggagataacaatgcagcctacaatgctgtgagagctcacacggtataaga 120
           ||||||||||||||||||||||| ||     ||           ||||||||||||||||
Sbjct: 271 tggtagggctggagataacaatg-ag-----aa-----------ctcacacggtataaga 313

                                                                       
Query: 121 atgtgacccagagaagaacaacggagtgaaaacatcaaattaaaataaacaaattgaaat 180
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 314 atgtgacccagagaagaacaatggagtgaaa-catcaaattaaaataaacaaattgaaat 372

                                                                       
Query: 181 tgaaagtttctgacctcgaaggtaacagattggagagaggaggctgaagaaagtaagaaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 373 tgaaagtttctgacctcgaaggtaacagattggagagagtaggctgaagaaagtaagaaa 432

                                                                       
Query: 241 atttcctcaagctttataatttacaaaatttggggaaaataatttttctttaaacctttt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atttactcaagctttataatttacaaaatttggggaaaataatttttctttaaacctttt 492

                                                                       
Query: 301 t--------ttttcccttctatgcttaatacatgtgtgttgggaagaaagtgtctatttt 352
           |        |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtctttttttttcccttctatgcttaatacatgtgtgttgggaagaaagtgtctatttt 552

                                                                       
Query: 353 aaaatagttacagccttcaagtagatctcaacaaatattcttcagccaaataaaattaat 412
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 553 aaaatagttacagccttcaagtagatctcaacaaatattcttcggccaaataagattaat 612

                                                                       
Query: 413 ttcgaaatgacctctaaacacatgaagttggggaatcacacaatctgataggcactattg 472
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 613 ttcgaaatgacctctaaacacatgaagttggggaatcgcacaatctgataggcactattg 672

                 
Query: 473 acttct 478
           ||||||
Sbjct: 673 acttct 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)