Query= MSMg01no456_f07.b1 MSMg01no456_f07.b1 CHROMAT_FILE:
MSMg01no456_f07.b1 PHD_FILE: MSMg01no456_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:07 2005
(496 letters)
>mm_chr14_49283931_49284826
Length = 896
Score = 926 bits (479), Expect = 0.0
Identities = 490/497 (98%), Gaps = 7/497 (1%)
Strand = Plus / Plus
Query: 4 ggaattctttg----ttccacactcttattcccttggacagttctgacctgttatatatg 59
||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctttgaaaat---acactcttattcccttggacagttctgacctgttatatatg 259
Query: 60 atgttaagatgggcatgtatttatttactagtctagctctcacccaattagatcgcctaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgttaagatgggcatgtatttatttactagtctagctctcacccaattagatcgcctaa 319
Query: 120 acagatcatttgataaaagcggcatgttccaggataaaaagcagtaacagaaagttcggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acagatcatttgataaaagcggcatgttccaggataaaaagcagtaacagaaagttcggg 379
Query: 180 gcgaggtccttcttggagagtcaaaacggctcaaattgtcagggaaaactattttcactt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcgaggtccttcttggagagtcaaaacggctcaaattgtcagggaaaactattttcactt 439
Query: 240 ttcctcctggagatgtgggcggaataaaacaaaacaaaaacaaaacaggaaaaccaaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcctcctggagatgtgggcggaataaaacaaaacaaaaacaaaacaggaaaaccaaaac 499
Query: 300 ccaaaccacggtcacttctccacagcgagcttagataataaacacggatagataataaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccaaaccacggtcacttctccacagcgagcttagataataaacacggatagataataaag 559
Query: 360 acggctgcggggcccttccacctaactttcaccgcttgctaaggattccattctagcttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acggctgcggggcccttccacctaactttcaccgcttgctaaggattccattctagcttc 619
Query: 420 ctctccacgcacagtgcaaaggggaatgggggtggggactctttctaagacacaagagtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctccacgcacagtgcaaaggggaatgggggtggggactctttctaagacacaagagtt 679
Query: 480 aaggtgaccgctctcga 496
|||||||||||||||||
Sbjct: 680 aaggtgaccgctctcga 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_f07.g1 MSMg01no456_f07.g1 CHROMAT_FILE:
MSMg01no456_f07.g1 PHD_FILE: MSMg01no456_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:07 2005
(457 letters)
>mm_chr14_49433379_49434235
Length = 857
Score = 839 bits (434), Expect = 0.0
Identities = 451/462 (97%), Gaps = 10/462 (2%)
Strand = Plus / Minus
Query: 1 agtgagtcagatgagactaaagttagtttacaaacacagtcgggcttaagggaagtacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agtgagtcagatgagactaaagttagtttacaaacacagtcgggcttaagggaagtacat 598
Query: 61 ttcagatagctggttaccagttcatcatgtttaagaagatgtccctttggaaaattttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttcagatagctggttaccagttcatcatgtttaagaagatgtccctttggaaaattttcc 538
Query: 121 accaacaagaaatgattagaagcaagcaaatgatagccaccaacatttcatctctgaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 accaacaagaaatgattagaagcaagcaaatgatagccaccaacatttcatctctgaatg 478
Query: 181 caattatgatgcaacttagaaatgctattatactgatgccctataattaagtaagcaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 caattatgatgcaacttagaaatgctattatactgatgccctataattaagtaagcaatt 418
Query: 241 aaaaac-----tttttacagttcattaacaaattgtcataactataccgacaagtgccca 295
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaaaacaaaaa-----acagttcattaacaaattgtcataactataccgacaagtgccca 363
Query: 296 tgaggtcacggtcatacaactgcctgaaatgatgacttaggttttcccaagagcacaaat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgaggtcacggtcatacaactgcctgaaatgatgacttaggttttcccaagagcacaaat 303
Query: 356 cctaaccaacaggcttatttccacctccaatccgtgttatataaatagcaacttggagga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cctaaccaacaggcttatttccacctccaatccgtgttatataaatagcaacttggagga 243
Query: 416 gaaaaaacgaaatagacattgcacccaaatgtgaggagagga 457
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 242 gaaaaaacgaaatagacattgcacgcaaatgtgaggagagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
