BAC Information

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BAC

Clone NameMSMg01-456L16
Chromosome14 (Build37)
Map Location 49,543,864 - 49,544,107
singlet/doubletsinglet
Overlap genenone
Upstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L16.T7 (MSMg01no456_l16.b1)MSMg01-456L16.TJ (MSMg01no456_l16.g1)
ACCAG542963AG542964
length740791
length of high quality
(start - end)
264 (320 - 583)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no456_l16.b1 PHD_FILE: MSMg01no456_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:39 2005CHROMAT_FILE: MSMg01no456_l16.g1 PHD_FILE: MSMg01no456_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCAGAGTTTCAACTAACTCTGCCTCCCAAGTGCTGGGATTAAAGGTG
TGAGCCACCACCAACTAGCCAAGAGCTAGATTTATATGTCTTGCATAATG
CGAGTGTAATGCGAGTGTATGTATGTAATAATGGAGATGCGTCATTATCC
TCATATCTGCATCATGCCTGTCCTAACCTATAGCTGAATGCATACTTAGG
GAGCTGAAGATTGTATGTATGTGCTTGTTTATTTTCACGCAAGAATTGAA
TCAGGTTTATTTCTCATTACAGAATAAATGGGGTATAGTGGCATGCCCCT
TAATCTCAGCACTCTGGAGGCAGAGGCAGGACCAAAGATTCAAGATCATT
TCCAACAATAGCAAGTTCAAGGCTAGCCTGGGCTACATACCTTGTCTGGA
TAATATACAAATAAATCTTGGCTGCATATTTGATATTGCAAGACACAAAT
CATGTTCAGCATTTCAGAATCAGTTGCTATTTGATTTTCTGGCTCATGTC
AAGATGGCTGCTTTGCATAAATATGTAACGCACAATATTGGAAATATGTT
TAAACCCGTTTTTGGAAAATCTGTTGGAATTGTTTTTTATTCTATCTTTG
GTCCCAGCCAAAACCAATTTCTCAACTTTTTTTTTTGGCCTTTTTGTTTC
TTTTGTAACATAGTTCTTTTTGTTTCCATTCTATTTTTGC
ACCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGATATTTGCAGTCACTTTCCTG
TAGTCAAAGAGGATAATGAGCTATGTTCTCGTGGATGGTTGCAGTTATAG
GGTAGGCCCTGATGACTTTGCCCCATCCTAAGAATGCAGAGCTGCTAGCT
GAGGACAAGTGGCTCATGAGTATGCCACAGGTCTTGGACTTAGTTGTATA
CATGAGAAGAAACGTATATTGCCAGGCTGAGATAAATGGAACCTAAACGT
ATGCAGCAGGATTCCACCCAACTTGTCTTATAGACCTGGAACTCAACATG
ACTATAGGTATTTTTAAAATATTGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGATAGATACCCCCCCCTTTTTCTCTTTTTCTTCTTTTCT
TCCCCCCTCTTTCCCTTTTTCTCCCTCTTCCCCTACTTTTTCTTTCCCCT
CTTTCTCCCTCCCTTCCTCTTTTTTCTCCTTTCCTTTTTTTTTCCTTTTC
TTTCTCTTTTCTCCCCCCTCCTTTTCCCCGTCTCTTTTCCCCTTTTCTTT
CTATCTCCCTCTTTTTTCCATTTTTCTATCTTATCTCTTTTTCTTCCCCC
TTCCTCTCTTTTCTTTTGTTTCTGTTCTTTTTTTTCTCCCCATTTCCTTT
TCCTCTGTCACTCTTCCCCTCTTTTCTTTCTCCCTCCCTCTTTTTTTCCT
CCCTTTATTCTTTTTCCTCTTTCTTTTCTTCTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l16.g1 MSMg01no456_l16.g1 CHROMAT_FILE:
MSMg01no456_l16.g1 PHD_FILE: MSMg01no456_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:39 2005
         (244 letters)



>mm_chr14_49543664_49544307
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatatttgcagtcactttcctgtagtcaaagaggataatgagctatgttctcgtggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatatttgcagtcactttcctgtagtcaaagaggataatgagctatgttctcgtggatg 385

                                                                       
Query: 61  gttgcagttatagggtaggccctgatgactttgccccatcctaagaatgcagagctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgcagttatagggtaggccctgatgactttgccccatcctaagaatgcagagctgcta 325

                                                                       
Query: 121 gctgaggacaagtggctcatgagtatgccacaggtcttggacttagttgtatacatgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctgaggacaagtggctcatgagtatgccacaggtcttggacttagttgtatacatgaga 265

                                                                       
Query: 181 agaaacgtatattgccaggctgagataaatggaacctaaacgtatgcagcaggattccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaaacgtatattgccaggctgagataaatggaacctaaacgtatgcagcaggattccac 205

               
Query: 241 ccaa 244
           ||||
Sbjct: 204 ccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)