BAC Information

Click to search

BAC

Clone NameMSMg01-457B21
Chromosome14 (Build37)
Map Location 21,950,660 - 21,951,047
singlet/doubletsinglet
Overlap geneAdk
Upstream geneKcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457B21.T7 (MSMg01no457_b21.b1)MSMg01-457B21.TJ (MSMg01no457_b21.g1)
ACCAG543259AG543260
length766740
length of high quality
(start - end)		438 (50 - 487)393 (85 - 477)
definitionCHROMAT_FILE: MSMg01no457_b21.b1 PHD_FILE: MSMg01no457_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:11 2005CHROMAT_FILE: MSMg01no457_b21.g1 PHD_FILE: MSMg01no457_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCAGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGG
TTTGGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTGCTGGTCCTTT
GAGTTGAAAATCTTCATTCTCATCTACTCCTATTATCTGTAGGTTTAGTC
TTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGAGATAGGATCTTTCTG
CATTTTGTATTTTCTTTGATTGTTGTGCCAATGTTCTCTATGGAATCTTC
TGCACCTGAGATTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTCT
ATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCGTTGCCTCACT
TTGGGTTTTCTTTATTGTGTCAACTTCCCTTTTTAGGTCTAGTATGGTTT
TGTTTATTCCAATCATCTGTTTGGATGTGTTTTCCTGTTTTTCTATAAGG
ACTTGCAACTCTTTATCAGTGTTTTCCTGTATTTCTTTAAGTGAGGTATT
AAAGACCTTCTTGATGTCTTCTACCATATCATGAAATATGCCCTTTAAAT
CCAAGGCCTAGGTTTTCTGGGGCGGTTGTGGTGGCCCCCTCCATGGTTGA
AATGGTTATTATTTGTTTTCTCACATGTGTGATTGGTTCTTGTTTTTTTC
TTTCAAGTATTTATTTTCTTTTTATCTTCACATCTGATGGAAATAATTAA
GCCTGCACTATAATAT

CCCATTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCAGTTGGGAGGC
AGAAACAGGCAGATTTCTGAGTTCGAGGCCAGCATGGTCTACAGAGTCAG
TTCCAGGACAGCAAAGTCTATACAGAGAAACCTTGTATCAAAAAAGCAAT
AAATAAATAAATAAATAAATAAATAAATAAATAGCCAAGTGAACTCTTTT
CCCCATAAAGCTTGTAATATATTATTATTGCTTAAATTGAATAATCATTT
TTACCCTTGGCACTGAACAATAAGATAAACAGCAGCAATATATTTTCACC
TTTTAAATAAGTAATCTTAGTTTATAAGGACCAACAAGCGAATTACTAGA
CATTATAACTATTCATTTTTCCCCGCTAATAGCATGCTTCAAATTTTGAT
TACTTCTAAATCTGTTGTATTAAGTCTGAAACCGATTANTGACATACTGT
ATCCTGCTAAGTAGAATTAAATTAGGGTAAAATTGATTAGGGCATAAATG
AGGCAGGTGTAAACTTTATCACTTGGATTAGAAGAGCTTATTACGGATAT
TTTTACTTTAACCTAGAGAAAAAGACCCCCGGGGGCCCTCCCCGCCCCCC
CTAGGATCGAAAACTTTTAATTTGGTTTGAAAGAACATAAGGGTATAACC
CCCCCTTGAAAAAAAAATTTGTGGTCACATTCTTTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_b21.g1 MSMg01no457_b21.g1 CHROMAT_FILE:
MSMg01no457_b21.g1 PHD_FILE: MSMg01no457_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:11 2005
         (393 letters)



>mm_chr14_21950309_21951104
          Length = 796

 Score =  673 bits (348), Expect = 0.0
 Identities = 380/396 (95%), Gaps = 11/396 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagcagttgggaggcagaaacaggcagatttctgagttcgaggccagcatggtctacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 739 ccagcagttgggaggcagaaacaggcagatttctgagttcgaggccagcatggtctatag 680

                                                                       
Query: 61  agtcagttccaggacagcaaagtctatacagagaaaccttgtatcaaaaaagcaataaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 679 agtcagttccaggacagcaaagtctatacagagaaaccttgtatcaaaaaagc------t 626

                                                                       
Query: 121 aaataaataaataaataaataaataaatagccaagtgaactcttttccccataaagcttg 180
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 625 --ataaataaataaataaataaataaatagtcaagtgaactcttttccccataaagctta 568

                                                                       
Query: 181 taatatattattattgcttaaattgaataa---tcatttttacccttggcactgaacaat 237
           |||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||
Sbjct: 567 taatatattattattgcttagattgaataatcttcatttttacccttggcactgaacaat 508

                                                                       
Query: 238 aagataaacagcagcaatatattttcaccttttaaataagtaatcttagtttataaggac 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagataaacagcagcaatatattttcaccttttaaataagtaatcttagtttataaggac 448

                                                                       
Query: 298 caacaagcgaattactagacattataactattcatttttccccgctaatagcatgcttca 357
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 447 caacaagcgaattactagacattataactattcatttttccctgctaatagcatgcttca 388

                                               
Query: 358 aattttgattacttctaaatctgttgtattaagtct 393
           ||||||||||||||||||||||||||||||||||||
Sbjct: 387 aattttgattacttctaaatctgttgtattaagtct 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 796
Length adjustment: 9
Effective length of query: 384
Effective length of database: 787
Effective search space:   302208
Effective search space used:   302208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |